Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6800g00006 ATGGCTGTTGCCAAGAGCGACAGCAACAGTGAACCTTGTACTTCATACAATTGTTACAAAGTTGCAGCCTTGACTGAGACCATATTAGAGACAAGTCAAGTCTCTAATCTAAAAGATCGGTACGTTCTCGGCGAGCAATTGGGTTGGGGACAGTTTGGTGTCATAAGGGCATGTTCTGACAAGTTAACAGGAGAGGTTTTGGCCTGCAAATCAATTGCTAAAGACAGGTTGGTTACTTCGGATGATTTGAGGAGTGTAAAACATGAGATAGAGATAATGGCTAGGCTATCCGGTCACCCCAATGTTGTGGATCTCAAAGCAGTTTATGAAGAGGAAGGCTTTGTTCACTTGGTGATGGAACTTTGTGCTGGAGGAGAGCTTTTTCATCGATTAGAGAAGCATGGATGGTTTTCAGAATCTGAAGCCAGGGTTATCTTCAGGCACCTTATGCAGGTGGTTTTGTATTGTCATGAAAACGGGGTTGTTCATAGAGATTTGAAGCCTGAGAACATTCTCTTAGCAACAAGATCCTCCTCATCTCCTATTAAATTGGCAGATTTTGGACTAGCAACCTACATCAAGCCTGGTCAAAGTTTGCACGGTTTAGTTGGGAGTCCTTTCTACATAGCTCCAGAGGTATTAGCTGGTGCTTATAACCAGGCTGCTGATGTGTGGAGTGCAGGTGTAATTCTTTACATTCTGTTGAGTGGGACGCCTCCGTTTTGGGGGAAGACTAAATCCCGGATTTTTGAAGCTGTTAAAGCTGCTTCCCTCAAGTTTCCATTGGAACCTTGGGATCGCATTTCTGAATCAGCTAAGGATTTGATCAAGGGAATGCTGTGTACAGACCCTTCTCGAAGACTCACTGCCCAAGAGGTTTTAGATCATTGCTGGATGGAAAGCAACCAAACAAATCAAGAACAACTTGGTGAAAATCAAATCCAAAGTTGCAAACAATGGGATGTTGGTGGCAGCACATTCTCAGCTTCTTTCATGTCCAGGAATCAGGACATTAGCTTTGGCGCCGGCTCTCCTACTTGTGATGCTCAATCCCCTACTTTCACATGCAGATCATCATTTTCTTCTTTTTTGGAAGAACCAGTCACGCCATGTGTGCTATCTGCCGGGTTTTCATTCAAGAGTGTAGGCGATTCCTCTGGTTTGGAATTCTCTTCTCCAATTCCCTCGATGCTTAGCTTTTCATTCCTCAGTCCCTCTCCTGTCGTTGAACACAAGAGTTGTAAATTAGAGTGTTCAGCTAACATGTCAGATGTAGATGCAATTGCTGGAGAAGCTAGCTTGGGAAAGTTACTTTTGCTACAAGATTCTCATCTTTGCATTGAACACGATGCTAAAGAAACGAATCGCAAGCCTGCTGACGCTAAAAGGTCAATTGGAATGAATGGACACAAGGTACTGGGAATCCACAGCAAGAGAAACAGGACAATTGGACTTGGTGAGTGTGAGCAACTTGACTTTGTAGTGACTGAATCAGTCATCCGTTGGTCATCCTGCACTCAACTACCAACATCTTTGAGATCATCTCTCGTTTGCTAA 1557 0.438 MAVAKSDSNSEPCTSYNCYKVAALTETILETSQVSNLKDRYVLGEQLGWGQFGVIRACSDKLTGEVLACKSIAKDRLVTSDDLRSVKHEIEIMARLSGHPNVVDLKAVYEEEGFVHLVMELCAGGELFHRLEKHGWFSESEARVIFRHLMQVVLYCHENGVVHRDLKPENILLATRSSSSPIKLADFGLATYIKPGQSLHGLVGSPFYIAPEVLAGAYNQAADVWSAGVILYILLSGTPPFWGKTKSRIFEAVKAASLKFPLEPWDRISESAKDLIKGMLCTDPSRRLTAQEVLDHCWMESNQTNQEQLGENQIQSCKQWDVGGSTFSASFMSRNQDISFGAGSPTCDAQSPTFTCRSSFSSFLEEPVTPCVLSAGFSFKSVGDSSGLEFSSPIPSMLSFSFLSPSPVVEHKSCKLECSANMSDVDAIAGEASLGKLLLLQDSHLCIEHDAKETNRKPADAKRSIGMNGHKVLGIHSKRNRTIGLGECEQLDFVVTESVIRWSSCTQLPTSLRSSLVC 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6800g00006 518 FunFam Calcium-dependent protein kinase 1 43 126 - -
Vium6800g00006 518 CDD STKc_CAMK 40 298 - -
Vium6800g00006 518 Pfam Protein kinase domain 41 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6800g00006 518 ProSitePatterns Protein kinases ATP-binding region signature. 47 74 IPR017441 GO:0005524
Vium6800g00006 518 SMART serkin_6 41 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6800g00006 518 Gene3D Phosphorylase Kinase; domain 1 42 127 - -
Vium6800g00006 518 PANTHER SERINE/THREONINE-PROTEIN KINASE 27 330 - -
Vium6800g00006 518 FunFam Phosphoenolpyruvate carboxylase kinase 128 315 - -
Vium6800g00006 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Vium6800g00006 518 ProSiteProfiles Protein kinase domain profile. 41 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6800g00006 518 SUPERFAMILY Protein kinase-like (PK-like) 38 365 IPR011009 -
Vium6800g00006 518 Gene3D Transferase(Phosphotransferase) domain 1 128 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6800g00006 Vium-Chr6800 43153 46530 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6800g00006 28 322 EF-hand Containing Proteins AT3G57530 48.311 2.94e-99 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vium6800g00006 Pkinase 4.3e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6800g00006 - - gmx:100776088 904.82