Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6800g00001 ATGGCTTCTGCAACACTCTCTCTGCATTATCCTCTTCTTCTTCTTCATTCTCCTCTTTCTACCAAAATTACCAAACCACCCCTCTCACTGCGACCCCTTCTTCTCCCTCGCCCCCTCCACTCGCGCTTTCTCCTCCCTCCGCCACGCGCCTACGTTACGGCGCCCGCATCCGACCCGAATTTCGGAGACCCGGATCCGAAGCTGATCGGGTTGGTTCCGGAGAAGGCAAAGCCGCAAAACGTGATCACGTGGAGCCTGCTCTGCACGCTTCTCATGAACCACAAACTGCGCCTGGCTCTCGTGTTCGCAACGCTCTTCGCCTGCTCCACCTGTACCCTATCCATGCCCCTCTTTTCCGGACGGTTTTTTGAAGTTCTAATTGGAGCTAGACCTGAACCGTTATGGAAGCTGCTTACTAAAATTGGAGTTCTGTATGCCTTGGAGCCACTTTTAACTATTATTTTTGTTATAAACATGAACATAGTGTGGGAGAAAATTATGTCGACACTAAGAGCTCAGATCTTCGGAAGAATATTGATTCAAAAGATTGAGTTTTTTGACAAATATAAGGTTGGTGAACTCACAGGTTTGTTAACATCTGATTTGGATTCTCTTAAAAATATTGTCAGTGAGAATGTCTCAAGGGATCGCGGATTCAGGGCATTATCTGAGGTCATTGGAACAATATTCATACTTTTTTCTTTATCACCGCAACTGGCACCCATTCTAGGTGTTCTGATGCTCGCAGTTTCCATTTCAATTGCTGTCTACAAGAGATCGACATTGCCAGTTTTTAAAGCACATGGGAAGGCCCAAGCATCTATATCTGACTGTGTGACTGAAACGTTTTCAGCTATTCGAACAGTAAGATCCTTTGGTGGTGAAAAGCGCCAAATGTTCTCTTTTGCTAATCAGGTTCTATCTTTCCAATCTAGTGGGATAAAGCTTGGGACTTTCAAATCTGTAAATGAATCTTTAACTAGAGTTGCAGTTTATATTTCTTTAATAGCATTATACTGTCTTGGAGGAAGCAAGGTTAAGGCGGGTGAACTCTCTGTTGGAACCATGGCATCTTTTATCGGTTATACTTTCACTTTAACATTCGCTGTTCAAGGACTGGTTAATACTTTTGGAGATCTCCGTGGAACTTTTGCTGCTGTTGAGAGGATCAACTCTGTTTTTTCTGGGGTTCAAGTTGATGATGCCCTGGCTTATGGCTTAGAAAGAGAACTGAGACAAAAAACAGTGGAGGATGAAAACTATAAATTGGTCTTATCTAATATTTCTACCGAGAATAACCAAAAAAATTATTTTCACTTTATGTCAGCTCTTAAAACATCAAGCAATTTATTTAGCATAGCTTGGTCGGGAGATATTTGCCTTGAAGATGTATATTTCTCTTATCCATTAAGGCCGGATGTGGAAATCTTACGTGGCTTAAATTTAAGACTAAAATGTGGAACTGTAACTGCACTGGTGGGTCCAAGTGGTGCAGGCAAAAGTACAGTAGTCCAGCTATTGTCTCGTTTTTATGAGCCAACAAGTGGCTGTATAACAGTTGCAGGAGAGGATGTCCGAACATTTGACAAGAGTGAATGGGCCCGGGTTGTTTCCATTGTAAATCAAGAGCCTGTTTTGTTTTCGGTGTCTGTTGGAGAAAACATTGCATATGGGCTTCCAGATGAAGATGTCTCTAAAGAAGATGTCATTAAGGCAGCAAAAGCTGCAAATGCTCATGACTTTATAATTTCACTACCACAGGGCTATGATACACTTGTTGGTGAGCGTGGAGGCCTATTGAGTGGAGGACAGAGACAGAGAATTGCCATAGCCCGCGCTCTCCTAAAGAATGCTCCCATCCTTATACTTGATGAGGCTACCAGTGCCCTGGATGCTGTCAGTGAGCGCTTGGTCCAGGAAGCTCTCAACCATTTGATGAAGGGAAGAACCACATTAGTAATAGCCCACCGATTAAGCACAGTCCAAAATGCATACCAAATTGCAGTCTGTTCTGAGGGGAGGATTACAGAATTAGGCACTCATTTTGAGCTATTGGCTAAGAAGGGCCAATATGCTTCACTGGTTGGCACACAAAGGCTTGCCTTTGAATAA 2112 0.4328 MASATLSLHYPLLLLHSPLSTKITKPPLSLRPLLLPRPLHSRFLLPPPRAYVTAPASDPNFGDPDPKLIGLVPEKAKPQNVITWSLLCTLLMNHKLRLALVFATLFACSTCTLSMPLFSGRFFEVLIGARPEPLWKLLTKIGVLYALEPLLTIIFVINMNIVWEKIMSTLRAQIFGRILIQKIEFFDKYKVGELTGLLTSDLDSLKNIVSENVSRDRGFRALSEVIGTIFILFSLSPQLAPILGVLMLAVSISIAVYKRSTLPVFKAHGKAQASISDCVTETFSAIRTVRSFGGEKRQMFSFANQVLSFQSSGIKLGTFKSVNESLTRVAVYISLIALYCLGGSKVKAGELSVGTMASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSVFSGVQVDDALAYGLERELRQKTVEDENYKLVLSNISTENNQKNYFHFMSALKTSSNLFSIAWSGDICLEDVYFSYPLRPDVEILRGLNLRLKCGTVTALVGPSGAGKSTVVQLLSRFYEPTSGCITVAGEDVRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDEDVSKEDVIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQEALNHLMKGRTTLVIAHRLSTVQNAYQIAVCSEGRITELGTHFELLAKKGQYASLVGTQRLAFE 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6800g00001 703 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 99 382 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium6800g00001 703 Pfam ABC transporter 477 628 IPR003439 GO:0005524
Vium6800g00001 703 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 459 697 IPR003439 GO:0005524
Vium6800g00001 703 Gene3D - 457 700 IPR027417 -
Vium6800g00001 703 FunFam ABC transporter B family member 28 75 398 - -
Vium6800g00001 703 CDD ABC_MTABC3_MDL1_MDL2 459 698 - -
Vium6800g00001 703 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 450 698 IPR027417 -
Vium6800g00001 703 SUPERFAMILY ABC transporter transmembrane region 87 390 IPR036640 GO:0005524|GO:0016020
Vium6800g00001 703 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 64 701 IPR039421 -
Vium6800g00001 703 SMART AAA_5 486 660 IPR003593 GO:0016887
Vium6800g00001 703 Pfam ABC transporter transmembrane region 99 369 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium6800g00001 703 Gene3D ABC transporter type 1, transmembrane domain 72 395 IPR036640 GO:0005524|GO:0016020
Vium6800g00001 703 CDD ABC_6TM_TAP_ABCB8_10_like 102 390 - -
Vium6800g00001 703 FunFam ATP-binding cassette sub-family B member 8, mitochondrial 457 701 - -
Vium6800g00001 703 ProSitePatterns ABC transporters family signature. 600 614 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6800g00001 Vium-Chr6800 21319 30162 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6800g00001 456 703 Calmodulin-binding Proteins AT2G36910 55.378 1.18e-75 263