Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6799g00006 ATGATTCCGTGGGGTGGCCTCAGTTGCTGTTTGAGTGCTGCTGCCCTTTATCTTCTCGGCAGAAGCAGTGGCAGGGATGCGGAAATTCTTAAATCGGTTACGAGGGTCAATCAGTTGAAGGAACTGGCTCAACTGTTAGATGCTGAAATATTACCCTTGATTGTTTCAATTTCTGGAAGAGTCGGCTCTGAAACCCCAATTAACTGTGAGTTCAGTGGTTTAAGAGGCGTAATAGTTGAAGAAACAGCAGAGCAGCATTTTCTTAAACACAATGATGCTGGTTCCTGGATACAAGATTCTGCTTTGATGCTATCAATGAGTAAAGAGGTTCCTTGGTATCTGGATGATGGGCGTGATCGTGTGCATGTGGTTGGAGCTCGGGGTGCCACTGGTTTTTCATTACCTGTTGGAAGTGAGGCATTTGAAGAGTCAGGTCGGTCACTTGTACGTGGAACATTGGATTATCTCCAAGGTCTCAAGATGCTTGGGGTCAAGAGAATTGAACGGGTACTTCCTATTGGAACTTCCTTGACGGTTGTTGGTGAGGCTGCTAAAGATGATGTTGGGACCATTCGAATTCAACGACCCCACAAAGGACCATTTTATGTCTCTCCCAAAACAATTGATCAACTAATTGCAAATCTGGGAAAATGGGCAAGGTGGTATAAGTATGCCTCTGTGGGCTTGACAGTGTTTGGTGCTTATCTGATAGCTAAGCATGCTATTCGATACATATTGGAAAGACGGCGCCGCAGCTATCTACAAAGAAAGGTTCTTGCTGCTGCTGCGAAGAAGTCAGGATCAAATAATGATGTTGAAAAGGCGGACAGCTTATCAGATGTTGCTAAAAGGGATCGTTTAATGCCGGATTTGTGTGTAATATGCCTTGAACAGGAATACAATGCTGTTTTTGTTCCGTGTGGCCATATGTGTTGCTGTACAGCTTGTTCTTCACACTTGACCAATTGTCCTCTTTGCCGGCGACAGATAGAGAAGGTTGTCAAGACTTTCCGTCATTGA 1020 0.4461 MIPWGGLSCCLSAAALYLLGRSSGRDAEILKSVTRVNQLKELAQLLDAEILPLIVSISGRVGSETPINCEFSGLRGVIVEETAEQHFLKHNDAGSWIQDSALMLSMSKEVPWYLDDGRDRVHVVGARGATGFSLPVGSEAFEESGRSLVRGTLDYLQGLKMLGVKRIERVLPIGTSLTVVGEAAKDDVGTIRIQRPHKGPFYVSPKTIDQLIANLGKWARWYKYASVGLTVFGAYLIAKHAIRYILERRRRSYLQRKVLAAAAKKSGSNNDVEKADSLSDVAKRDRLMPDLCVICLEQEYNAVFVPCGHMCCCTACSSHLTNCPLCRRQIEKVVKTFRH 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6799g00006 339 Pfam Zinc finger, C3HC4 type (RING finger) 290 333 - -
Vium6799g00006 339 ProSiteProfiles Zinc finger RING-type profile. 292 327 IPR001841 -
Vium6799g00006 339 FunFam E3 ubiquitin-protein ligase SP1 280 338 - -
Vium6799g00006 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 338 IPR013083 -
Vium6799g00006 339 Pfam E3 Ubiquitin ligase 85 233 IPR022170 GO:0004842|GO:0006996|GO:0016567
Vium6799g00006 339 SUPERFAMILY RING/U-box 291 333 - -
Vium6799g00006 339 CDD RING-HC_LRSAM1 292 335 - -
Vium6799g00006 339 FunFam Baculoviral IAP repeat containing 7 301 337 - -
Vium6799g00006 339 PANTHER - 1 306 IPR044231 GO:0004842|GO:0016567
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6799g00006 1 266 C3H Transcription Factor Family AT1G63900 77.985 7.67e-154 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6799g00006 K15688 - gmx:100803252 646.351