Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6796g00003 ATGGCCGAATCACTTCTTTTCAGCTTCGCAGAATCAGTTTTAGGAAAGCTTGCCACTGTTGTCGTTCAAGAAGCTTCTTTGGCGCTTGGTGTACACAGCGAGCTACAGCAGATGACAGAAAGTATGGCACTCATCAGAGGTGTGCTCTCAGATGCTGAGCAAAAGACTCCACAGAGCAGTGCGCTGAGCCAATGGCTGAGACAGGTCAAGCGTGTGTTTTGTGATGCTGAAGACATAGTCGATGATTTTGAGTGCGAAGCATTAAGGAAGCATGTTGTCAAAACCTATGGTAGCTGCTCAAGAAAGGTAAGTCGTTTCTTCTCGAAAAGTAATCCTGCTGTTTATCGTCTTAGAATGGCGCATCACATTCAAGACATCAACACCAGATTGACCAAACTTGCATCTCAAAGAACCCTGTTTGCCCTTCAAGTCATTGACCGAGATACACGTGTCGTGCACGTGAGGAAAATGACTCATTCTCATGTAAACCCTTCCAATGTTACAGGAAGGGAACATGATAGGAATGAAATAATAAAACTTCTGGTGCAAGATGGTGATTGTCAAAGTCTTTCTGTTATTTCCATTGTGGGAATGGGAGGCTTGGGAAAAACCACACTTGCTAAGTTGGTCTTCAATGACACAAACATTGATGAATGTTTTCAGTTGAAGATGTGGGTCTGTGTCTCTAATGATTTTGAACTTAGGAATGTGCTCATTAAAATCCTCAATTCCGCTCCAAACCCAACTCGGGAAAACTTCAATGACTTTGAGACGGAGCAACTTCAAATTCGTTTGAGAGAGACACTTGAAGGTCAGAAGTTCTTGCTTGTGTTGGATGACGTGTGGAACGAGGATCCTGAAAAATGGGATGAGTTGAAGGAAATAATAGATTTGAATGTTGAAGGGAGTAAAGTCCTAGTGACCACTCGTAGCCGTACAGTAACTGCCACAATGCGCAATAAATCATCAAATTTGTACCTTCTTGGATGTCTCTCTGAAGAGGATTCTCTTTCTCTATTTGTGAAATATGCTTTTGATGATGGAGAAGAAAAAAAACATCCGCAACTGTTGGAGATTGGAAAAGAAATAGTTGAAAAATGTGGTGGGTTACCTTTAGCAGTGAAAACAGTGGGGAGCTCACTGTTCTCAAGGTTTGATAAGAAAGAGTGGGAGTCTATAAGAGACAATGAGATTTGGAATTTACAACAAAATGAAAGAGGCATTTTGCCAGCTCTCAAACTAAGTTACGATCAACTCCCTTCATATTTAAAACCTTGTTTTGCTTCTTTCTCCCTGTTCCCAGAGGATACTTCTATTCATTGTTCTCACATTTCTACCCTATGGGAAGCACTTGGTTTTCTTCCGCCACCAAAGGAAAGTGAATCAATGATGGAGGTTGCCAATCATCTTGTGCATGAGCTATGGTCAAGATCTTTTCTTTCAGATTATCTTGACTATGGGAGCGATTGCTCATTTACGTTACATGATTTGGTGCATGATCTTGCAACTTATATTGCAAAAGGTGAGTTTGAAAGAATAGATCTCCGCAATAAAAAAAATTCTGAGAATGCCCAACATTTAGCCTTTATGGAAAATAATTTGCTTGCTCAAGCTTTTCCTCACAAAGGTTTAAGAAGTGTGTGTCTTCCCGAGGGAATGAACAATGAAGCTTTCTTGATTACATTGGTGTCGAGATGCAAATACTTGAGGGTTTTAGAATTATGTTCATGTGAATTGGAGAGTTTGCCTTACTTTATTGGGAAGTTGAAACATTTAAGATATCTTAATCTCCAGTGTAGTGAAAAACTCAGGAGACTCCCTGAGAACTTCAAAATTTGCAAACTTTGA 1848 0.4021 MAESLLFSFAESVLGKLATVVVQEASLALGVHSELQQMTESMALIRGVLSDAEQKTPQSSALSQWLRQVKRVFCDAEDIVDDFECEALRKHVVKTYGSCSRKVSRFFSKSNPAVYRLRMAHHIQDINTRLTKLASQRTLFALQVIDRDTRVVHVRKMTHSHVNPSNVTGREHDRNEIIKLLVQDGDCQSLSVISIVGMGGLGKTTLAKLVFNDTNIDECFQLKMWVCVSNDFELRNVLIKILNSAPNPTRENFNDFETEQLQIRLRETLEGQKFLLVLDDVWNEDPEKWDELKEIIDLNVEGSKVLVTTRSRTVTATMRNKSSNLYLLGCLSEEDSLSLFVKYAFDDGEEKKHPQLLEIGKEIVEKCGGLPLAVKTVGSSLFSRFDKKEWESIRDNEIWNLQQNERGILPALKLSYDQLPSYLKPCFASFSLFPEDTSIHCSHISTLWEALGFLPPPKESESMMEVANHLVHELWSRSFLSDYLDYGSDCSFTLHDLVHDLATYIAKGEFERIDLRNKKNSENAQHLAFMENNLLAQAFPHKGLRSVCLPEGMNNEAFLITLVSRCKYLRVLELCSCELESLPYFIGKLKHLRYLNLQCSEKLRRLPENFKICKL 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6796g00003 615 Gene3D - 330 420 IPR042197 -
Vium6796g00003 615 Gene3D - 10 124 - -
Vium6796g00003 615 PANTHER DISEASE RESISTANCE PROTEIN RP 60 614 IPR044974 GO:0006952
Vium6796g00003 615 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 428 IPR027417 -
Vium6796g00003 615 Pfam NB-ARC domain 171 417 IPR002182 GO:0043531
Vium6796g00003 615 PRINTS Disease resistance protein signature 268 282 - -
Vium6796g00003 615 PRINTS Disease resistance protein signature 192 207 - -
Vium6796g00003 615 PRINTS Disease resistance protein signature 367 381 - -
Vium6796g00003 615 PRINTS Disease resistance protein signature 587 603 - -
Vium6796g00003 615 Gene3D - 149 325 IPR027417 -
Vium6796g00003 615 CDD RX-CC_like 8 135 IPR038005 -
Vium6796g00003 615 SUPERFAMILY L domain-like 494 613 - -
Vium6796g00003 615 Gene3D - 422 503 IPR036388 -
Vium6796g00003 615 Gene3D Ribonuclease Inhibitor 523 615 IPR032675 -
Vium6796g00003 615 FunFam Probable disease resistance protein At1g61300 149 323 - -
Vium6796g00003 615 Pfam Rx N-terminal domain 10 98 IPR041118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6796g00003 Vium-Chr6796 27651 30607 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6796g00003 193 455 WRKY Transcription Factor Family AT5G45050 26.449 2.09e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6796g00003 - - vum:124844101 1224.15