Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6796g00001 ATGGCCGAATCACTCATTGTCGCGGTTGCAGAATCACTTATAACGAAGCTCGCTTCTCGAGCTGTCGAACAAGCTTCTTTGGCGTTGGGTGTGTACCAAGAGCTACAGCAGATGAAAAAGACCATGGCACTTGTCAAAGCATTCTTGTTAGACGCTGAGCAAAAGAAGCAGCAGAACAATGCCCTGAGTGAGTGGCTAAGACAGATAAGGCAGGTGTTTGCCCACGCGGAAGACATAGTCGACAACTTTGAATGCGAAGTGTTGCGGAATCACGTTGTCAGCTCTCATGGCAGCTTCTGCAGGAAGGTATGTCGTTTGTTTTCAACTAGTAATCCTGTGGTTTACCGTTACAGAATGGGGCGTGAGATAAAAGACATCAAGAAGCAGTTAGAGAAGGTTGCAACTGATGGCCACATGTTTGGTCTTCAAAGCAGTGACAAGGATACAAAGGTTTTGAATGCGAGGGAAATGACTCATTCACATGTGAATGTCTCAAATGTGGTAGGAAGAGAACATGATAAGCAGAAGATAATAGAGCTTTTGCTGCAAGATAATCATCATGACAGAAGTCTCTCAGTGATTTCCATTGTGGGATTTGGAGGCTTGGGAAAGACCACTCTCGCAAAGGTAGTGTTCAATGACACTAGCATTGAGGAATGTTTCACTTTGAAGATGTGGGTGTGTGTCTCTAATGATTTCGAACTTAGGAATGTGCTTATTAAAATCCTAAACTCTGCTCCTAACCCCACCAATGAGAAGTTCAAAAATTTAGACACGGATCAACTTCAAATTCGTTTGAGAAGTAGCCTTCAAAGTGAGAAGTTCTTGCTCGTCTTAGACGATGTGTGGAACGAGAATCGTATTAAATGGGATGAGTTGAAGGAAATCATAGAGATGGTAGGTAACAAAGGAAGTAAAATCTTGGTGACTACTCGTAGTCACTCAATAGATGCCATGATGCGCACTAAAACCTCTAACTCTTACATTCTAAAAGGCCTTTCTGAGGAGGATTCCATGTCTCTGTTTGTCAAATCTGCTTTTGATGATGGAGAAGGAAAAAACCATCCAGAGTTAATGGAGATTGGGAGACAAATTGTGAGAAAATGTGGAGGAATACCATTGGCGGTGAGAACCTTAGGAAGCTCACTGTTCTCAAGGGTGGACCGAAAAGAGTGGGAGAATATAAGAGACAATGAAATTTGGAACTTAAAACAAAATGAAAATGATATTTTGCCTGCTCTTGAGTTAAGTTATGATCAACTACCTTCGCATTTGAAACGATGTTTTGCTTGCTTTTCTCTTGCCTCGAAGGACTTTGATGTTTCTAGTTCTTACGTTGCTCTGCTGTGGGAGGCACTTGGTTTTCTTTCCCCACCAAAGCAAAATGAAACAACACATGATGTTGCTAATGAATATTTGCGTGAGCTATGGTCAAGATCTTTTCTCACAGATTTTCTTGACATGGGGAGCACATGCAGATTTAAATTACATGATTTAGTCCGTGATCTTGCAGTGTACGTAGCCAAAGGTGAGTTTCAAATATTGTATCCCCACAGTACAAGTATATCTGAGCATGCCCAACACTTGTCATTCATTGAAAATGATATGCTTGGCCAAGATCTCGTTCCCATGGGTGCAAGAACTATAATTTTTCCCATGGAAGCTACTAATGATGCTTTCTTGAATACGTTGGTATCCAGGTGCAAATACCTCAGAGTTCTAGACTTGAGTTATTCTGAATACGAGAGTTTGCCTAGCTGCATTGGAAAGTTGAAACATTTAAGATATCTCAATCTTTCAGGTAATAAAAAACTTAAGGGACTCCCAGATTCCTTATGCAAACTCCAAAATTTGCAAACTTTGGACCTAAGAGGTTGCATAAAGCTGCAAAATCTGCCCAAAGGAATAAGAAAGTTAGTCAGCCTTCGTCGGCTGCTTGTAACCACTAGGCAACCAGATTTTCCAGACAAAGAGATTTCAAAATTGGCTTGTATAGAAACAGTAGAACTCTATTCTTGTGATAATTTGGAGTCATTGTTCCAAGCTATACAACCTAGAAGTCTTAAGTTTTTGCATCTTTCTGGTTGTGGGGGTTTAAAGTCTCTGTCCTTTCATGTCATTACAAATTTAGAGAGTTTGGTTATCTTCAAATGCAGTAAGATGGAATTGTCAATGGGCCTTAGCAACCTTAATTCCATTCCTGATTCAAGGTTAAAATTACTTGTTCTTCAAAGTTTGCCACAGTTGGTCACTTTGCCTGAGTGGTTGCAAGGATCTGTGAACACACTGCATTCCTTGTTACTTGTTGACTGCAACAATCTTGAGGAGCTTCCTGAGTGGCTGTCAACTTTGACCTCTCTCAAACTACTTATAATTGAACATTGTCCAAGGTTGATCTCACTCCCTGATAGCACGCATCACCTACGAAACCTTGAACATTTGGAAATCAATGATTGTCCTGAATTATGCAAAAGATGTCAGCCAGGAGTTGGACTGGATTGGCACAAAATATCCCACATCAAAGAAGTTATCATTGGTGAACCAGAAGAGTAG 2553 0.407 MAESLIVAVAESLITKLASRAVEQASLALGVYQELQQMKKTMALVKAFLLDAEQKKQQNNALSEWLRQIRQVFAHAEDIVDNFECEVLRNHVVSSHGSFCRKVCRLFSTSNPVVYRYRMGREIKDIKKQLEKVATDGHMFGLQSSDKDTKVLNAREMTHSHVNVSNVVGREHDKQKIIELLLQDNHHDRSLSVISIVGFGGLGKTTLAKVVFNDTSIEECFTLKMWVCVSNDFELRNVLIKILNSAPNPTNEKFKNLDTDQLQIRLRSSLQSEKFLLVLDDVWNENRIKWDELKEIIEMVGNKGSKILVTTRSHSIDAMMRTKTSNSYILKGLSEEDSMSLFVKSAFDDGEGKNHPELMEIGRQIVRKCGGIPLAVRTLGSSLFSRVDRKEWENIRDNEIWNLKQNENDILPALELSYDQLPSHLKRCFACFSLASKDFDVSSSYVALLWEALGFLSPPKQNETTHDVANEYLRELWSRSFLTDFLDMGSTCRFKLHDLVRDLAVYVAKGEFQILYPHSTSISEHAQHLSFIENDMLGQDLVPMGARTIIFPMEATNDAFLNTLVSRCKYLRVLDLSYSEYESLPSCIGKLKHLRYLNLSGNKKLKGLPDSLCKLQNLQTLDLRGCIKLQNLPKGIRKLVSLRRLLVTTRQPDFPDKEISKLACIETVELYSCDNLESLFQAIQPRSLKFLHLSGCGGLKSLSFHVITNLESLVIFKCSKMELSMGLSNLNSIPDSRLKLLVLQSLPQLVTLPEWLQGSVNTLHSLLLVDCNNLEELPEWLSTLTSLKLLIIEHCPRLISLPDSTHHLRNLEHLEINDCPELCKRCQPGVGLDWHKISHIKEVIIGEPEE 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6796g00001 850 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 431 IPR027417 -
Vium6796g00001 850 Gene3D - 10 123 - -
Vium6796g00001 850 Pfam Rx N-terminal domain 10 96 IPR041118 -
Vium6796g00001 850 PRINTS Disease resistance protein signature 193 208 - -
Vium6796g00001 850 PRINTS Disease resistance protein signature 369 383 - -
Vium6796g00001 850 PRINTS Disease resistance protein signature 269 283 - -
Vium6796g00001 850 PRINTS Disease resistance protein signature 613 629 - -
Vium6796g00001 850 Gene3D - 423 505 IPR036388 -
Vium6796g00001 850 Pfam NB-ARC domain 171 419 IPR002182 GO:0043531
Vium6796g00001 850 FunFam Probable disease resistance protein At1g61300 149 325 - -
Vium6796g00001 850 Gene3D Ribonuclease Inhibitor 516 684 IPR032675 -
Vium6796g00001 850 Gene3D Ribonuclease Inhibitor 685 828 IPR032675 -
Vium6796g00001 850 CDD RX-CC_like 8 134 IPR038005 -
Vium6796g00001 850 PANTHER DISEASE RESISTANCE PROTEIN RP 37 816 IPR044974 GO:0006952
Vium6796g00001 850 Gene3D - 148 326 IPR027417 -
Vium6796g00001 850 SUPERFAMILY L domain-like 495 840 - -
Vium6796g00001 850 Gene3D - 332 422 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6796g00001 Vium-Chr6796 15243 19440 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6796g00001 166 817 WRKY Transcription Factor Family AT4G12020 25.747 5.30e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6796g00001 - - gmx:100780033 1300.42