Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium678g00001 ATGGAGGGTCATCATCTCCATCGCCACCATGGGCAGCAACAACAGCAACAAAGGCTTCAGCCTCAGAATACGAGTGCCAACGTTGATGCGACTGATAGGTTTCCCCAATGGAGTATCCAAGAGACTAAGGAGTTTCTCGTGATTCGTGCAGAGCTGGATCAGACTTTCATGGAGACTAAGAGGAACAAGCAGTTGTGGGAAGTGATCTCAACGAGAATGAAGGAAAAGGGTTACCATAGAAGTGCAGAGCAGTGCAAGTGCAAGTGGAAAAACCTCGTTACTCGCTACAAGGGGTTTGAAACAATGGAGCAAGAAGCGACGAAGCAGCAATTCCCATTTTACAATGAATTCAGTGCGATTTTCACGGCAAGGATGCAGAGAATGCTGTGGGCTGAAGCTGAGGGTGGGTCGAAGAAGAACAAGGGGACGCAGCTCTCATCGGACGAGGAAGAAGATGGCAATGAAGAGAGTGCAGAAGCTGGTGGGGGAAGAAAGAAGAAAAAAGCAAAGATAGCTAGTGGGGGTGGTGGTGGTAGCAGTTTGAAGGAGATTCTGGAGGAGTTCATGAGGCAGCAGATGCAGATAGAAGCACAATGGATGGAAGCATTTGAAGCAAGGGAAAATGAGAGGAGGTTGAAGGAGATGGAGTGGAGGCAAGCCATGGAAGTGTTGGAGAATGAGAGGATAATGATGGAAGAAAGATGGAGAGAAATAGAGGAACAAAGGAGGATCAGAGAAGAAGCTAGGGCTGAGAAAAGGGATGCTCTAATCACAGCTTTGCTAAACAAACTAGAGAGGCAAGAAATGTGA 810 0.4741 MEGHHLHRHHGQQQQQQRLQPQNTSANVDATDRFPQWSIQETKEFLVIRAELDQTFMETKRNKQLWEVISTRMKEKGYHRSAEQCKCKWKNLVTRYKGFETMEQEATKQQFPFYNEFSAIFTARMQRMLWAEAEGGSKKNKGTQLSSDEEEDGNEESAEAGGGRKKKKAKIASGGGGGSSLKEILEEFMRQQMQIEAQWMEAFEARENERRLKEMEWRQAMEVLENERIMMEERWREIEEQRRIREEARAEKRDALITALLNKLERQEM 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium678g00001 269 CDD GT1 35 98 - -
Vium678g00001 269 ProSiteProfiles Myb-like domain profile. 37 93 IPR001005 -
Vium678g00001 269 MobiDBLite consensus disorder prediction 1 26 - -
Vium678g00001 269 Pfam Myb/SANT-like DNA-binding domain 36 119 IPR044822 -
Vium678g00001 269 MobiDBLite consensus disorder prediction 134 177 - -
Vium678g00001 269 Gene3D - 37 98 - -
Vium678g00001 269 PANTHER FI21293P1 13 265 - -
Vium678g00001 269 Coils Coil 221 258 - -
Vium678g00001 269 FunFam Zinc finger and SCAN domain-containing 20 37 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium678g00001 Vium-Chr678 9887 11742 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium678g00001 23 266 Trihelix Transcription Factor Family AT5G01380 51.957 5.98e-69 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vium678g00001 Myb_DNA-bind_4 1.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium678g00001 - - gmx:100791013 357.451