Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6788g00001 ATGAGTGGCGGGAATCAAACCAGCCCCAAACGTCCCACACGCGAGTGTATTTCACGCTCCAAATCCTTCGCATTACACAAACTCTTTCCCATGCCTTTCAACAAAACCCTTTTTCCTCAACGCTGCGAAGCAAAGGGAAAAACAGCGAAGATGAAAGATTCAGCGGAAACTGATCCTATTGCTGAGTCTCTCAACCTACTGAGTACACTCCTGGACTCCGAACTACCCAGCATCACAAACTTCAAAGGGAAATGGTCACTTGCCCGAGTCAAACTCACCCATCTCCAAACTCATCTCACCGATTTCTCCGCCGAGTTCCCCTACGCCTCCACCACCAACCCCCTCTCCCTCCACCTCCTCCACTCGATCTCCCACACACTCAACGACGCCGTTTTACTCTCCCGCACTTGCCAGCCCCAAGACCTCCTTAACGGCAAGCTCAAAACCCAAAGCGACCTCGACTCCCTCCTGGCCACCCTCGACCGCCACGTCACCGACTGCGACATCCTTTTCCGCAGCGGCCTTCTCATTGAAAGCACCGCCGTTTCCACCTCCAAAAGAGAAGCTATCCGCTCCGCATCACGAAACCTAATCACCCGGTTGCAAATCGGGTCGCCCGAGTCCAAAACTTCCGCGATGGACTCTCTATTGGACCTCCTTAATGAAGATGACAAAAATGTTACCATTGCTGTGGCCCAGGGCGTCGTTCCCGTACTCGTGCGCCTACTTGATTCACCCTCCGACATGAAGGAGAAAATAGTCGCTGCCATCTCCAAAGTATCCACAGTTGAAAGTGCCAAGACTGTGCTCCTAGCAGAGGGTTTACTTCTTCTCAACCACCTTCTCCGAGTACTTGATTCTGGAAGCGGATTCGCGATTGAGAAATCAAGCATCGCGCTTCAAGCACTGAGTCTTACCAAGGACAACGCCAGAGCGATTGGCTCGCGCGGCGGAATCTCGTCTCTGCTCGAGATTTGCCAGGCTGGCACCCCTGGCGCGCAGGCCTCCGCAGCCGCCGTGTTGCGCAACCTCGCCGCGTTCGCGGAAATTAGGGACAATTTCGCGGAGGAGAATGCAGTGGTGGTTTTAGTCGCCTTGGCTTCCTCCGGGACTGCTTCGGCGCGTGAGAACGCGATTGGGTGTTTGTCGAATTTGATTTCCGAGGCTGACTCGGACGGTTTGTCGAATTTGAGGGTTATGGTGGTTAAAGAAGGGGGGATTGAGTGTTTGAAGAATTACTGGGACTCGGGTACTCCAATTCCGAGTCTTGAAGTTGCAGTGACGATGTTGCGGCATTTGGCTGAGAGTGCTGCAATTGGGGAGGTGCTGATAGGTGAAGGGTTTGTTCGGAGGCTTGTGGGGGTGCTGAACTGTGAGGTGCTGGCGATGAGGGTTGCCGCCGCGAGGGCGGTTCACGCTATAGGGTTGAACAGTGGCAGGGCAAGGAAGGAGATGGGCGAATTGGGGTGCGTTTTTACTTTGATTAAGATGTTGGATGGCAAAGGTGTAGAGGAGAAAGAGGTTTCTGCAATGGCATTGTCGGTCCTGCTGATGCACCCTGCGAATAGGAGGGTTTTCCGCAAGGATGAAAGAGGGGTTGTTAGTGCTGTTCATTTGTTGAACCCTTCGTTGCAAGGGTTGGATAAGAAGTACCCTGTTTCGTTGCTCGCTTCGTTAGTGCATTCCAAGAGTTGCAGAAAGCAGATGGTAGCAGCAGGGGCTTGTGTATATATGCAGAAGCTTGTCGAGATGGATGTGCCGGGATCAAAGAAACTCTTGGAGAGTCTCGGGCGTGGTAAGATTTGGGGTGTTTTTTCTAGACCCTAG 1827 0.5293 MSGGNQTSPKRPTRECISRSKSFALHKLFPMPFNKTLFPQRCEAKGKTAKMKDSAETDPIAESLNLLSTLLDSELPSITNFKGKWSLARVKLTHLQTHLTDFSAEFPYASTTNPLSLHLLHSISHTLNDAVLLSRTCQPQDLLNGKLKTQSDLDSLLATLDRHVTDCDILFRSGLLIESTAVSTSKREAIRSASRNLITRLQIGSPESKTSAMDSLLDLLNEDDKNVTIAVAQGVVPVLVRLLDSPSDMKEKIVAAISKVSTVESAKTVLLAEGLLLLNHLLRVLDSGSGFAIEKSSIALQALSLTKDNARAIGSRGGISSLLEICQAGTPGAQASAAAVLRNLAAFAEIRDNFAEENAVVVLVALASSGTASARENAIGCLSNLISEADSDGLSNLRVMVVKEGGIECLKNYWDSGTPIPSLEVAVTMLRHLAESAAIGEVLIGEGFVRRLVGVLNCEVLAMRVAAARAVHAIGLNSGRARKEMGELGCVFTLIKMLDGKGVEEKEVSAMALSVLLMHPANRRVFRKDERGVVSAVHLLNPSLQGLDKKYPVSLLASLVHSKSCRKQMVAAGACVYMQKLVEMDVPGSKKLLESLGRGKIWGVFSRP 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6788g00001 608 Gene3D - 184 419 IPR011989 -
Vium6788g00001 608 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 55 606 - -
Vium6788g00001 608 SMART arm_5 477 518 IPR000225 GO:0005515
Vium6788g00001 608 SMART arm_5 223 262 IPR000225 GO:0005515
Vium6788g00001 608 SMART arm_5 347 387 IPR000225 GO:0005515
Vium6788g00001 608 SMART arm_5 306 346 IPR000225 GO:0005515
Vium6788g00001 608 Gene3D - 421 595 IPR011989 -
Vium6788g00001 608 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 234 275 IPR000225 GO:0005515
Vium6788g00001 608 SUPERFAMILY ARM repeat 196 535 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6788g00001 Vium-Chr6788 7622 9841 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6788g00001 192 371 U-box Gene Family AT1G23030 28.177 1.11e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6788g00001 - - vum:124844092 1087.02