Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6773g00003 ATGGAAGTTAATACTACTGCCACCGTACCTGCAGGGCCACCAGCTAAGAACCATTCTTTCACACAGCACCGCTTACATTCAGAAAGACATAGACATAGCCACGGCCATTTCCCCACCAAAACCATTCTCATTACCGTCTCATTCGTTACCTTAGTTACGGTCCTATTTGTCATTTTTGTGGTCCTATTCTTGATCCGTCGCCAAAAATCTTCCTCCAAAAGTGGCACTTGCAAAGAAGACAGCACAGAGCTTCATGACACAAGCAGCAGGCTCATTACTTCATCAACGTTGAATTCTAGCCCAGAAGTAAAGAGTGGGTGTCTTCACGGGGGAAATTTGGGCAGGACCCCAGCACCTACATTTCGAGGAGTCCAAGTGTTCACATATAGGGAACTAGAAATTGCTACCGATGGATTCAGTGAAAGAAATATGATTGGTGGTAATGGAGGACATGGCTTGATGTATAGAGGAGTTCTAAGTGATGGCACTTTGGCAGCAATTAAGTTGCTTCGCAGTGAGGGTAAGCAAGGGGAACGTGCCTTCAGAATAGAGGTCGATCTCCTAAGTCGCTTGCACTCTCCATATTTGGTGGAGTTACTTGGCTATTGCGCTGACCAACACCACAGGTTATTGATTTTTGAATACATGCCCGATGGTACACTTCACCACCATCTTCACTCCCCCAACGATCAAACTCAACCGTTGGATTGGTGGGCCAGGATGAGGATAGCCCTTGATTGTGCCAGGGCACTGGAATTCCTTCATGAACATGCAGTGTCTCCGGTGATCCACAGAGACTTCAAGACTAACAACGTTCTGCTGGATCAAAATTTCCGTGCCAAGGTGTCTGATTTTGGATTGGCTAAGATGGGATCAGAGAAGAAGAACGGTCAGGTTTCCACCCGTGTATTGGGGACCACTGGATATCTGGCACCAGAGTACGCCACGGGTAAGCTTACCACAAAGTCAGATGTTTACAGCTATGGTGTGGTTCTTCTCGAACTCCTCACGGGACGTGTGCCTGTTGATATCAAGCGGGCCCAGGGAGAACACGTCCTTGTCTCTTGGGCTCTTCCACGGTTGACAAACAGAGAAAAGGTGATTGAAATGGTTGATCCAGCTCTACGTGGACAGTACTCAAAGAAGGATTTAATTCAGATAGCTGCCATTGCAGCAATGTGCATACAGCCAGAAGCTGATTACAGGCCGCTCATGACAGATGTTGTACAATCACTAATACCACTTGTTAGGAACCCATCCTCCCTTAGTTCTAGCTCCCTACGATTTCAGAAACAAACACCAAAGAGCAGAAGCAGCCTAGAAATAAACTAA 1332 0.4677 MEVNTTATVPAGPPAKNHSFTQHRLHSERHRHSHGHFPTKTILITVSFVTLVTVLFVIFVVLFLIRRQKSSSKSGTCKEDSTELHDTSSRLITSSTLNSSPEVKSGCLHGGNLGRTPAPTFRGVQVFTYRELEIATDGFSERNMIGGNGGHGLMYRGVLSDGTLAAIKLLRSEGKQGERAFRIEVDLLSRLHSPYLVELLGYCADQHHRLLIFEYMPDGTLHHHLHSPNDQTQPLDWWARMRIALDCARALEFLHEHAVSPVIHRDFKTNNVLLDQNFRAKVSDFGLAKMGSEKKNGQVSTRVLGTTGYLAPEYATGKLTTKSDVYSYGVVLLELLTGRVPVDIKRAQGEHVLVSWALPRLTNREKVIEMVDPALRGQYSKKDLIQIAAIAAMCIQPEADYRPLMTDVVQSLIPLVRNPSSLSSSSLRFQKQTPKSRSSLEIN 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6773g00003 443 PANTHER OS07G0668900 PROTEIN 95 422 - -
Vium6773g00003 443 FunFam Receptor-like serine/threonine-protein kinase ALE2 216 432 - -
Vium6773g00003 443 CDD STKc_IRAK 147 415 - -
Vium6773g00003 443 Gene3D Transferase(Phosphotransferase) domain 1 216 431 - -
Vium6773g00003 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
Vium6773g00003 443 Gene3D Phosphorylase Kinase; domain 1 114 215 - -
Vium6773g00003 443 MobiDBLite consensus disorder prediction 1 34 - -
Vium6773g00003 443 ProSiteProfiles Protein kinase domain profile. 140 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6773g00003 443 MobiDBLite consensus disorder prediction 87 103 - -
Vium6773g00003 443 SUPERFAMILY Protein kinase-like (PK-like) 120 412 IPR011009 -
Vium6773g00003 443 FunFam Serine/threonine-protein kinase PBS1 108 215 - -
Vium6773g00003 443 Pfam Protein tyrosine and serine/threonine kinase 147 412 IPR001245 GO:0004672|GO:0006468
Vium6773g00003 443 MobiDBLite consensus disorder prediction 73 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6773g00003 Vium-Chr6773 21896 25447 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6773g00003 107 436 Receptor kinase-like Gene Family AT3G58690 61.834 2.16e-148 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vium6773g00003 PK_Tyr_Ser-Thr 1.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6773g00003 - - gmx:100499645 734.561