Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6772g00003 ATGCTACGGTGCGATCCGTTTGAAGGAGCAGGACGACGTGTCGACCAAATCCACGATCGAAACCGCGCTTTCTTCCTCCGCGAAGACACCGCTGTCCACGGCGCCACCGGCGGCGATTGATGTCCTTCTCGAAGCATCGCCCCCGCCTTCGCTCCCGGCAGAAGCTGCGGTCGCGATTCCGGTTCAGGTCGCGGTGGTGACGAGCTCTACATCCTCGGGTTCAGCGCAACCGAACCGGTGCGCCGCGTGTCGAAGCGTGTGGGGTTGACTGGGTTCAAGTGCAGGTGCGGAGTCACGTTTTGCGGGACCCACAGGTATCCGGAGAAGCACGCGTGCGGGTTCGACTTTAAGACGGTGGGGCGAGAGGAGATTGCTCGGGCTAACCCCGTGATCAAAGCAGAGAAGCTGCGGAGGATATGA 420 0.6167 MLRCDPFEGAGRRVDQIHDRNRAFFLREDTAVHGATGGDXCPSRSIAPAFAPGRSCGRDSGSGRGGDELYILGFSATEPVRRVSKRVGLTGFKCRCGVTFCGTHRYPEKHACGFDFKTVGREEIARANPVIKAEKLRRI 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6772g00003 139 SMART AN1_Zf_4 82 117 IPR000058 GO:0008270
Vium6772g00003 139 SUPERFAMILY AN1-like Zinc finger 84 134 IPR035896 -
Vium6772g00003 139 PANTHER AN1-TYPE ZINC FINGER PROTEIN 84 139 - -
Vium6772g00003 139 ProSiteProfiles Zinc finger AN1-type profile. 72 120 IPR000058 GO:0008270
Vium6772g00003 139 Gene3D - 76 135 IPR035896 -
Vium6772g00003 139 Pfam AN1-like Zinc finger 85 116 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6772g00003 Vium-Chr6772 15994 16858 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6772g00003 85 139 C2H2 Transcription Factor Family AT3G52800 72.727 6.35e-26 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6772g00003 - - vum:124844068 275.789