Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6772g00002 ATGGCGGAAGAACACCGATGCGAGACTCCGGAAGGTCACCGTCTCTGCGCCAACAACTGCGGCTTCTTCGGTAGCTCCGCTACCATGAACCTCTGCTCCAAATGCTACGGTGCGATCCGTTTGAAGGAGCAGGACGACGTGTCGACCAAATCCACGATCGAAACCGCGCTTTCTTCCTCCGCGAAGACGCCGCTGTCCACGGCGCCACCGGCGGCGATTGATGTCCTTCTCGAAGCATCGCCCCCGCCTTCGCTCCCGGCAGAAGCTGCGGTCGCGGTTCCGGTTCAGGTCGCGGTGGTGACGAGCTCTACATCCTCGGGTTCAGCGCAACCGAACCGGTGCGCCGCGTGTCGGAAGCGTGTGGGGTTGACTGGGTTCAAGTGCAGGTGCGGAGTCACGTTTTGCGGGACCCACAGGTATCCGGAGAAGCACGCGTGCGGGTTCGACTTTAAGACGGTGGGGCGAGAGGAGATTGCTCGGGCTAACCCCGTGATCAAAGCAGAGAAGCTGCGGAGGATATGA 522 0.6149 MAEEHRCETPEGHRLCANNCGFFGSSATMNLCSKCYGAIRLKEQDDVSTKSTIETALSSSAKTPLSTAPPAAIDVLLEASPPPSLPAEAAVAVPVQVAVVTSSTSSGSAQPNRCAACRKRVGLTGFKCRCGVTFCGTHRYPEKHACGFDFKTVGREEIARANPVIKAEKLRRI 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6772g00002 173 SUPERFAMILY AN1-like Zinc finger 104 168 IPR035896 -
Vium6772g00002 173 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Vium6772g00002 173 FunFam Zinc finger AN1-type containing 6 89 169 - -
Vium6772g00002 173 PANTHER AN1-TYPE ZINC FINGER PROTEIN 13 173 - -
Vium6772g00002 173 ProSiteProfiles Zinc finger AN1-type profile. 108 154 IPR000058 GO:0008270
Vium6772g00002 173 Pfam A20-like zinc finger 14 36 IPR002653 GO:0003677|GO:0008270
Vium6772g00002 173 Gene3D - 1 64 - -
Vium6772g00002 173 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Vium6772g00002 173 SMART AN1_Zf_4 114 151 IPR000058 GO:0008270
Vium6772g00002 173 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 57 - -
Vium6772g00002 173 Gene3D - 92 169 IPR035896 -
Vium6772g00002 173 Pfam AN1-like Zinc finger 114 150 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6772g00002 Vium-Chr6772 14479 15944 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6772g00002 1 173 C2H2 Transcription Factor Family AT3G52800 55.114 9.29e-57 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6772g00002 - - gmx:100813749 251.906