Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6765g00010 ATGAAAAAGGAATTAGATGATCAAGGACAGTGTTCCTCTCAACCAATCAACAACAATAACAACAACAATATTCAAAGCTACCAAGAGCACCTTCTCCTTCAACAACAGATGCATCAGCAGCAGCAGCAGCAACAAAATAGTGACAACATCTTCGGGGGTTCAAGAGGGTTAATGTTCCCTGAAGTTACTCCAATCATGCAACCATGGTCCATCCCTCCGGTTCACTCATTCAACCCGGGTCCGGTTCACTACAACAATATTAACACCAACCCTGTCAGAGACCATCATGACCAAACGTTTATAGTCCCTCCCACACCTTCACCCTATGCGAGCTTCTTCAGCAGAAGGGTCCCTTCTCTTCAATTTGCATACGAGAGTCCTTCTTCTGATCTCCACCATCTAAGGATCATATCTGACACCCTCGGACCTATGGTTCAACCCGGTTCAGCACCCTTTGGACTCCAAGCCGAGTTGGGAAAAATGACTGCTCAAGAAATCATGGAGGCTAAGGCTCTTGCTGCATCAAAGAGTCACAGTGAAGCAGAAAGAAGACGTAGAGAGAGAATCAACAACCATCTTGCCAAGCTTCGGAGTTTATTGCCAAACACTACAAAAACAGATAAAGCTTCGCTGCTAGCAGAAGTGATTCAGCACGTGAAGGAGCTGAAGCGGCAAACCTCTCTGATAGCAGAAAGCAGTGCAGTGCCAACCGAGGCAGACGAGTTGACAGTAGATGCAGCAGACGAAGATGGAAAGTTTGTGATCAAAGCCTCACTGTGCTGTGAAGATAGATCAGATCTCTTACCCGACCTCGTAAAAACGTTGAAGGCCTTGAAGCTGAGAACCCTCAAGGCTGAGATCACATCGCTTGGTGGGCGTGTGAAGAACGTGTTGGTCATTGCTGGTGACGAAGAAAGTTCAAACACCAATGGAGAACAAAGCATTCAGCAGCAACAACAACAATACTGTATTACCTCAATACAAGAAGCACTGAAGGCAGTGATGGAGAAGAGTGGTGGTGGAGATGAATCAGCTTCTGGGAATGTTAAGCGCCAAAGGACTAATAACATCAATTTTCTTGAACAAAGATCTTTGTAA 1098 0.4563 MKKELDDQGQCSSQPINNNNNNNIQSYQEHLLLQQQMHQQQQQQQNSDNIFGGSRGLMFPEVTPIMQPWSIPPVHSFNPGPVHYNNINTNPVRDHHDQTFIVPPTPSPYASFFSRRVPSLQFAYESPSSDLHHLRIISDTLGPMVQPGSAPFGLQAELGKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSLIAESSAVPTEADELTVDAADEDGKFVIKASLCCEDRSDLLPDLVKTLKALKLRTLKAEITSLGGRVKNVLVIAGDEESSNTNGEQSIQQQQQQYCITSIQEALKAVMEKSGGGDESASGNVKRQRTNNINFLEQRSL 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6765g00010 365 Gene3D - 168 229 IPR036638 GO:0046983
Vium6765g00010 365 SMART finulus 179 228 IPR011598 GO:0046983
Vium6765g00010 365 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 177 229 IPR036638 GO:0046983
Vium6765g00010 365 FunFam transcription factor bHLH30 168 231 - -
Vium6765g00010 365 CDD ACT_UUR-ACR-like 258 335 - -
Vium6765g00010 365 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 173 222 IPR011598 GO:0046983
Vium6765g00010 365 PANTHER TRANSCRIPTION FACTOR BHLH30 33 358 IPR045847 GO:0003700|GO:0006355
Vium6765g00010 365 Pfam Helix-loop-helix DNA-binding domain 176 222 IPR011598 GO:0046983
Vium6765g00010 365 MobiDBLite consensus disorder prediction 1 23 - -
Vium6765g00010 365 CDD bHLH_AtAIG1_like 168 246 - -
Vium6765g00010 365 MobiDBLite consensus disorder prediction 8 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6765g00010 Vium-Chr6765 74664 78011 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6765g00010 22 363 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 54.891 1.10e-109 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium6765g00010 HLH 2.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6765g00010 - - gmx:100779653 509.605