Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6765g00008 ATGGCCTCAAAACATACAGGTTTTAGCATCAAGGTGAGTCTGATGGTAGTTTTTCTAACAACGCAAGTTGTGTTGTCTGCCGATACACCAATGCCTGCTGATAAGACTCAATTGGGACAATGGTTTTCAAATAATGTAAAGCCTTTAGAAAGCAGAAAGGGTACCCTAGATAAGGAATTAGTAGCTGCTGAAGAAGGGAAGACAGTTATTAAGGTAAGTCAAGATGGCAAAGGGCAATTCAAGACCATCACCGATGCCCTTAAAAGCATACCTAGCGGAAACAAGAAGCGTGTAATTTTGCATATTGGACCTGGAACTTACAAAGAGAAAATCGTGGTTGAGAGCACAAAACCTTTCATCACCTTCTATGGAACCCCTGGGCAAATGCCAACATTGACCTATGGGGGCACGGCAAAACAATATGGCACTGTTGAAAGTGGGACATTGTCTATTTTATCAGACTACTTTGTGGGGGCAAACATAATAGTTCGGAACTCCGCACCAAGACCTACTCTAAACACGGTAGGAGGTCAAGCAGTCGCATTACGAATTTCTGGAGACAAAGCCACATTTTATAATTGTCAGCTTTATAGTTACCAAGACACATTGTTGGATGATGCAAATAGACATTTTTTCAAAGACTGCTTCATTGAAGGAACTGTTGATTACATTTTTGGAAGTGGAAAGTCGCTATATGTGAATTGTGAACTAAGAACGCTAGGCGATGATGGGTTAACTTTTATAACAGCACAAGCAAGAAAAAGTACGAAAGAGGATAATGGCTTCTCCTTTGTCCATTGTGAACTTACTGGAACTGGAACAGGTGTTTACTTGGGAAGAGCCTGGTATGGTTATTCCACGGTGATCTTTTCTTATTGTAACTTGGGAAACATTTTCAACAAGGAAGGATGGAGTGACAACAATAAAAAGGAATATGACAAAACTCTTTATTTTGGGGAGTACATGAACACAGGACCTGGTGCAGATGCCACAGGGCGTTCTAAATTGACAAGGAAACTTCAATACTCAGAGGTTCAAAATTACCTTGGTCTTGGTATGATAGAAGGCTCAAAATGGATACTTCCACCTCCTAAAGTATGA 1101 0.4051 MASKHTGFSIKVSLMVVFLTTQVVLSADTPMPADKTQLGQWFSNNVKPLESRKGTLDKELVAAEEGKTVIKVSQDGKGQFKTITDALKSIPSGNKKRVILHIGPGTYKEKIVVESTKPFITFYGTPGQMPTLTYGGTAKQYGTVESGTLSILSDYFVGANIIVRNSAPRPTLNTVGGQAVALRISGDKATFYNCQLYSYQDTLLDDANRHFFKDCFIEGTVDYIFGSGKSLYVNCELRTLGDDGLTFITAQARKSTKEDNGFSFVHCELTGTGTGVYLGRAWYGYSTVIFSYCNLGNIFNKEGWSDNNKKEYDKTLYFGEYMNTGPGADATGRSKLTRKLQYSEVQNYLGLGMIEGSKWILPPPKV 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6765g00008 366 SUPERFAMILY Pectin lyase-like 68 360 IPR011050 -
Vium6765g00008 366 Pfam Pectinesterase 70 348 IPR000070 GO:0030599|GO:0042545
Vium6765g00008 366 FunFam Pectinesterase 65 362 - -
Vium6765g00008 366 ProSitePatterns Pectinesterase signature 2. 217 226 IPR033131 -
Vium6765g00008 366 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 59 360 - -
Vium6765g00008 366 Gene3D - 64 362 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6765g00008 Vium-Chr6765 66786 68144 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6765g00008 5 366 Carbohydrate Esterase AT1G69940 50.000 2.42e-137 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6765g00008 K01051 - gmx:100813174 507.294