Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6765g00007 ATGGCCTCAAAACATACAGGATTTTGCATCAAGCTAAGTCTGACGGTAGTTTTTCTAACAATGCAAGTTGTGTTGTCTGCCGATACACCAATGCCTGCTGATAAGACTCAATTGGGGCAATGGTTTTCAAATAATGTAAAGCCTTTAGAAAGCAGAAAGAGTACCCTAGATAAGGAATTAGTAGCTGCTGAAGAAGGGAAGACAGTTATTAAGGTAAGTCAAGATGGCAAAGGGCAATTCAAGACCATCACTGATGCCCTTAAAAGCATACCTAGCGGAAACAAGAAGCGTGTAATTTTGCATATTGGACCTGGAACTTACAAAGAGAAAATCGTGGTTGAGAGCACAAAACCTTTCATCACCTTCTATGGAACCCCTGGGCAAATGCCAACATTGACCTATGGGGGCACGGCAAAACAATATGGCACTGTTGAAAGTGGGACATTGTCTATTTTATCAGACTACTTTGTGGGGGCAAACATAATAGTTCGGAACTCCGCACCAAGACCTACTCTAAACACGGTAGGAGGTCAAGCAGTCGCATTACGAATTTCTGGAGACAAAGCCACATTTTATAATTGTCAGCTTTATAGTTACCAAGACACATTGTTGGATGATGCAAATAGACATTTTTTCAAAGACTGCTTCATTGAAGGAACTGTTGATTACATTTTTGGAAGTGGAAAGTCGCTATATGTGAATTGTGAACTAAGAACGCTAGGCGATGATGGGTTAACTTTTATAACAGCACAAGCAAGAAAAAGTACGAAAGAGGATAATGGCTTCTCCTTTGTCCATTGTGAACTTACTGGAACTGGAACAGGTGTTTACTTGGGAAGAGCCTGGTATGGTTATTCCACGGTGATCTTTTCTTATTGTAACTTGGGAAACATTTTCAACAAGGAAGGATGGAGTGACAACAATAAAAAGGAATATGACAAAACTCTTTATTTTGGGGAGTACATGAACACAGGACCTGGTGCAGATGCCACAGGGCGTTCTAAATTGACAAGGAAACTTCAATACTCAGAGGTTCAAAATTACCTTGGTCTTGGTATGATAGAAGGCTCAAAATGGATACTTCCACCTCCTAAAGTATGA 1101 0.4033 MASKHTGFCIKLSLTVVFLTMQVVLSADTPMPADKTQLGQWFSNNVKPLESRKSTLDKELVAAEEGKTVIKVSQDGKGQFKTITDALKSIPSGNKKRVILHIGPGTYKEKIVVESTKPFITFYGTPGQMPTLTYGGTAKQYGTVESGTLSILSDYFVGANIIVRNSAPRPTLNTVGGQAVALRISGDKATFYNCQLYSYQDTLLDDANRHFFKDCFIEGTVDYIFGSGKSLYVNCELRTLGDDGLTFITAQARKSTKEDNGFSFVHCELTGTGTGVYLGRAWYGYSTVIFSYCNLGNIFNKEGWSDNNKKEYDKTLYFGEYMNTGPGADATGRSKLTRKLQYSEVQNYLGLGMIEGSKWILPPPKV 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6765g00007 366 SUPERFAMILY Pectin lyase-like 68 360 IPR011050 -
Vium6765g00007 366 FunFam Pectinesterase 65 362 - -
Vium6765g00007 366 Pfam Pectinesterase 70 348 IPR000070 GO:0030599|GO:0042545
Vium6765g00007 366 ProSitePatterns Pectinesterase signature 2. 217 226 IPR033131 -
Vium6765g00007 366 Gene3D - 64 362 IPR012334 -
Vium6765g00007 366 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 58 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6765g00007 Vium-Chr6765 62742 64088 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6765g00007 5 366 Carbohydrate Esterase AT1G69940 49.724 1.33e-135 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6765g00007 K01051 - gmx:100813174 504.212