Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6765g00005 ATGGCTGGGCCATCATGGTTGGTTGACAAAAGTAGAATTGCGACCAAAATTAAATGTGCATCAGGAACATGTGATCCTGAAAAGATTATATGGAGCAGCAATCCTACAAAGCCTTGCCCAAATTGTCAACATGATATTGACAACAGTGATGTAGCACAAGAGTGGCCTGGCTTACCAAAAGGTGTCAAATTTGATCCATCTGATCAAGAGATAATCTGGCACTTGCTTGCAAAAGTGGGGGTAGAAGGTTCCAAACCTCATCCTTTCATTGATGAATTTATTACTAGTCTTGAAGAAGATGATGGGATTTGCTATACTCATCCTAAAAGTTTACCTGGTATTAAGCAAGATGGAAGTGCTTCGTTCTTTTTTCATAGAGCAATCAAGGCTTACAACACTGGCAACCGAAAGCGTAGAAAGATAACAAGTCAAGATTTTGGTGAGGCCCGCTGGCACAAGACTGGAAAGACTAAACCAATTGTCTTGGGTGGGGCTCGAAAAGGATGGAAAAAGATTATGGTTCTGTATGAAAATAATATAGGAGGAGGAAAAGATGAAAAAACTAATTGGGTTATGCATGAATATCATCTAGGAGCAAAAGAAGATGAAAATGATGGGGAGTACATTTTCTCTAAAGTGTTTTACCAGCAACAAGTGAAATTGGGTGATAAAGATGATCAAGATGTTACTGAAGCAACTGAATCAACAATTGTGAAGGTGGTTCCAAACACTCCCAAATTGGTGACACTTGATCCTCCTTGCAACAAAAGGCATTGTGCAAATCTGGACCAAGGACAAGAAACACATAGTCTACTGCTGTCTCAGATGGATTGTTTACATGAAATTCAAGATGATTGCCAAGAACTTGCAACTGAATCTCAAAATGAAGGGGTGGAAAATAAAGAAAGTAATGCTGAGGAAGGCTCGAAATGGTGGGACAGCCAGTCACAGAATATGTTGGATTCGCAACAACTGGTCGAAGCTCTGTCTCTGTGTGACGATCTCCTCTACAGCCAGTCTCCCAGTAGAGATGGAAAACATGAAGATCATAAGAGCCAACCTGGTCTTTCTGTTTATGCTCAGCTAGGACCAGAATGTCTGAAGAAGGATATTGAAGAGTGTCAAAATCTTGTTGTCCATGATCCTGCAAATATAGTGAATGATAACCCTTCAGAGATTCGTCTAAGTCAGCTGGAATTTAGTTCACAGGACAGTTTTATTTCCTGGGGATACAACAAGGCTGTGAACTAA 1251 0.4037 MAGPSWLVDKSRIATKIKCASGTCDPEKIIWSSNPTKPCPNCQHDIDNSDVAQEWPGLPKGVKFDPSDQEIIWHLLAKVGVEGSKPHPFIDEFITSLEEDDGICYTHPKSLPGIKQDGSASFFFHRAIKAYNTGNRKRRKITSQDFGEARWHKTGKTKPIVLGGARKGWKKIMVLYENNIGGGKDEKTNWVMHEYHLGAKEDENDGEYIFSKVFYQQQVKLGDKDDQDVTEATESTIVKVVPNTPKLVTLDPPCNKRHCANLDQGQETHSLLLSQMDCLHEIQDDCQELATESQNEGVENKESNAEEGSKWWDSQSQNMLDSQQLVEALSLCDDLLYSQSPSRDGKHEDHKSQPGLSVYAQLGPECLKKDIEECQNLVVHDPANIVNDNPSEIRLSQLEFSSQDSFISWGYNKAVN 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6765g00005 416 FunFam NAC domain-containing protein 8 67 220 - -
Vium6765g00005 416 Pfam No apical meristem (NAM) protein 59 197 IPR003441 GO:0003677|GO:0006355
Vium6765g00005 416 SUPERFAMILY NAC domain 44 216 IPR036093 GO:0003677|GO:0006355
Vium6765g00005 416 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 5 375 IPR044799 GO:0003700
Vium6765g00005 416 Gene3D NAC domain 67 220 IPR036093 GO:0003677|GO:0006355
Vium6765g00005 416 ProSiteProfiles NAC domain profile. 58 216 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6765g00005 Vium-Chr6765 47433 51728 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6765g00005 23 220 NAC Transcription Factor Family AT1G28470 52.941 4.37e-71 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium6765g00005 NAM 3.5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6765g00005 - - gmx:100799488 682.945