Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6765g00003 ATGGCCACTGTTGCAACTACAGGAATTGGAGTAGGAGTGACCAAGCTCCAACAACACCAAAAGCCCAGGCAGAAGTCCTTGTTTCTTGGCCAGAGGCTTAGGATTCGACCCTCTGGGGAGGCTCAATGCAGTTCAAGATTGAATTTTTCAAACCCAACAAGAGTGGTTAAAGTTTTTGCACTAGGGGGTGAATGGATTGACACAGTTCACAACCTTTTTGTGGGTGTTGGGGTTGGACTTCCTTGCAGTGTGATGCAGTGTGGGGATGTAATCTATAGGAGCACTCTTCCCAAGTCCAATGGCTTGACTCTTACTGTCCCTGGGGTGATTCTGGCTTTGGGGACTCTATCTTACCTTTGGGCCACACCTGGTGTGGCACCTGGTTTCTTTGACATGTTTGTTCTTGCCTTTGTTGAGAGGTTGTTCCGACCAAGTTACAAGAAGGATGATTTTGCTCTGGGGAAGAAGTTGGGGGAAGGATCATTTGGAGTGGTTTATAGAGTGTCACTGGCCAACAAACCCTCTTCTAAGGAAGGTGACTTAGTCTTGAAGAAGGCGACTGAATATGGTGCTGTAGAAATTTGGATGAATGAGCGTGTACGAAGAGCTTGTGCAAGCAGCTGTGCAGATTTTGTCTATGGTTTTCTTGAGAGCTCTTCAAAGAAATCTGCTGAATACTGGCTTATATGGCGGTTTGAAGGGGATGCCACCCTAGCTGACTTGGTGCAGAGTAGAGAGTTTCCATATAATGTTGAAACATTAATTTTAGGTGAGGTTCAAGACTTGCCCAAGGGATTAGAAAGAGAAAATAGAATCATTCAGACAATCATGAGGCAGATCTTGTTTGCACTGGATGGTCTTCACTCAACTGGTATTGTGCATAGGGATATTAAGCCACAGAACATTATTTTCTCCGAAGAGTCTCGGACATTCAAAATCATTGATCTTGGAGCTGCTACAGACCTGCGAGTGGGCATAAACTACATTCCAAAGGAGTTTCTTTTGGATCCAAGATATGCTGCACCAGAGCAATACATCATGAGCACACAAACTCCTTCAGCACCCTCAGTCCCAGTTGCAACTGCACTTTCCCCAGTCTTATGGCAGTTGAATTCGCCAGACAGATTCGACATCTATAGTGCTGGTTTAATCTTTCTACAAATGGCTTTCCCTGGTCTACGGACTGATAATAGCCTCATTCAATTCAACCGTCAATTAAAGAGGTGTGACTATGACATAGTTGCATGGAGAAAAACTGTAGAGCCTCGATGCGGCCCTGAACTAAGGAGGGGTTTTGAGCTGTTGGATTTGGATGGTGGAATAGGATGGGAACTTCTAAAATCAATGGTAAGGTACAAAGCAAGACAAAGACTGAGTGCAAAAGCAGCATTGGCTCATCCTTATTTTGACAGAGAAGGCTTGTTGGCATTGTCTTTCATGCAAACACTGAGGCTGCAGCTCTTGCGGGCAACTCAACAGGACTATGGAGAAGCTGCCAAGTGGATTACTAATCTAATGGCAAAATCAGGGACTCAGAAGGATGGTGGATTCACTGAAGCTCAACTTCAGGAACTAAGAGAAATCGAACCCAAAATGAAGGCCAGTGCACCAAGGAATGCTCTAGCTTCAGCTCTTAAACTTCAGAGGAAAATTATAAGAACCTTAAATGAGAGTATGGATGAGCTCAACAGACGTAGGAAAAGCTTTTGGTGGAGCAGATGGATCCCAAGAGAAGAATGA 1740 0.446 MATVATTGIGVGVTKLQQHQKPRQKSLFLGQRLRIRPSGEAQCSSRLNFSNPTRVVKVFALGGEWIDTVHNLFVGVGVGLPCSVMQCGDVIYRSTLPKSNGLTLTVPGVILALGTLSYLWATPGVAPGFFDMFVLAFVERLFRPSYKKDDFALGKKLGEGSFGVVYRVSLANKPSSKEGDLVLKKATEYGAVEIWMNERVRRACASSCADFVYGFLESSSKKSAEYWLIWRFEGDATLADLVQSREFPYNVETLILGEVQDLPKGLERENRIIQTIMRQILFALDGLHSTGIVHRDIKPQNIIFSEESRTFKIIDLGAATDLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSVPVATALSPVLWQLNSPDRFDIYSAGLIFLQMAFPGLRTDNSLIQFNRQLKRCDYDIVAWRKTVEPRCGPELRRGFELLDLDGGIGWELLKSMVRYKARQRLSAKAALAHPYFDREGLLALSFMQTLRLQLLRATQQDYGEAAKWITNLMAKSGTQKDGGFTEAQLQELREIEPKMKASAPRNALASALKLQRKIIRTLNESMDELNRRRKSFWWSRWIPREE 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6765g00003 579 Coils Coil 545 565 - -
Vium6765g00003 579 CDD STKc_SNT7_plant 155 469 - -
Vium6765g00003 579 ProSitePatterns Protein kinases ATP-binding region signature. 157 184 IPR017441 GO:0005524
Vium6765g00003 579 SUPERFAMILY Protein kinase-like (PK-like) 147 474 IPR011009 -
Vium6765g00003 579 ProSiteProfiles Protein kinase domain profile. 151 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6765g00003 579 Gene3D Transferase(Phosphotransferase) domain 1 260 473 - -
Vium6765g00003 579 SMART serkin_6 151 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6765g00003 579 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 53 554 - -
Vium6765g00003 579 Pfam Protein kinase domain 153 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6765g00003 579 FunFam Serine/threonine-protein kinase STN7, chloroplastic 260 474 - -
Vium6765g00003 579 ProSitePatterns Serine/Threonine protein kinases active-site signature. 292 304 IPR008271 GO:0004672|GO:0006468
Vium6765g00003 579 Gene3D Phosphorylase Kinase; domain 1 138 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6765g00003 Vium-Chr6765 25389 33811 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6765g00003 269 470 Core Cell Cycle Gene Families AT2G38620 30.986 2.06e-17 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Vium6765g00003 Pkinase 1.1e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6765g00003 - - gmx:100778588 1043.49