LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium6765g00003	ATGGCCACTGTTGCAACTACAGGAATTGGAGTAGGAGTGACCAAGCTCCAACAACACCAAAAGCCCAGGCAGAAGTCCTTGTTTCTTGGCCAGAGGCTTAGGATTCGACCCTCTGGGGAGGCTCAATGCAGTTCAAGATTGAATTTTTCAAACCCAACAAGAGTGGTTAAAGTTTTTGCACTAGGGGGTGAATGGATTGACACAGTTCACAACCTTTTTGTGGGTGTTGGGGTTGGACTTCCTTGCAGTGTGATGCAGTGTGGGGATGTAATCTATAGGAGCACTCTTCCCAAGTCCAATGGCTTGACTCTTACTGTCCCTGGGGTGATTCTGGCTTTGGGGACTCTATCTTACCTTTGGGCCACACCTGGTGTGGCACCTGGTTTCTTTGACATGTTTGTTCTTGCCTTTGTTGAGAGGTTGTTCCGACCAAGTTACAAGAAGGATGATTTTGCTCTGGGGAAGAAGTTGGGGGAAGGATCATTTGGAGTGGTTTATAGAGTGTCACTGGCCAACAAACCCTCTTCTAAGGAAGGTGACTTAGTCTTGAAGAAGGCGACTGAATATGGTGCTGTAGAAATTTGGATGAATGAGCGTGTACGAAGAGCTTGTGCAAGCAGCTGTGCAGATTTTGTCTATGGTTTTCTTGAGAGCTCTTCAAAGAAATCTGCTGAATACTGGCTTATATGGCGGTTTGAAGGGGATGCCACCCTAGCTGACTTGGTGCAGAGTAGAGAGTTTCCATATAATGTTGAAACATTAATTTTAGGTGAGGTTCAAGACTTGCCCAAGGGATTAGAAAGAGAAAATAGAATCATTCAGACAATCATGAGGCAGATCTTGTTTGCACTGGATGGTCTTCACTCAACTGGTATTGTGCATAGGGATATTAAGCCACAGAACATTATTTTCTCCGAAGAGTCTCGGACATTCAAAATCATTGATCTTGGAGCTGCTACAGACCTGCGAGTGGGCATAAACTACATTCCAAAGGAGTTTCTTTTGGATCCAAGATATGCTGCACCAGAGCAATACATCATGAGCACACAAACTCCTTCAGCACCCTCAGTCCCAGTTGCAACTGCACTTTCCCCAGTCTTATGGCAGTTGAATTCGCCAGACAGATTCGACATCTATAGTGCTGGTTTAATCTTTCTACAAATGGCTTTCCCTGGTCTACGGACTGATAATAGCCTCATTCAATTCAACCGTCAATTAAAGAGGTGTGACTATGACATAGTTGCATGGAGAAAAACTGTAGAGCCTCGATGCGGCCCTGAACTAAGGAGGGGTTTTGAGCTGTTGGATTTGGATGGTGGAATAGGATGGGAACTTCTAAAATCAATGGTAAGGTACAAAGCAAGACAAAGACTGAGTGCAAAAGCAGCATTGGCTCATCCTTATTTTGACAGAGAAGGCTTGTTGGCATTGTCTTTCATGCAAACACTGAGGCTGCAGCTCTTGCGGGCAACTCAACAGGACTATGGAGAAGCTGCCAAGTGGATTACTAATCTAATGGCAAAATCAGGGACTCAGAAGGATGGTGGATTCACTGAAGCTCAACTTCAGGAACTAAGAGAAATCGAACCCAAAATGAAGGCCAGTGCACCAAGGAATGCTCTAGCTTCAGCTCTTAAACTTCAGAGGAAAATTATAAGAACCTTAAATGAGAGTATGGATGAGCTCAACAGACGTAGGAAAAGCTTTTGGTGGAGCAGATGGATCCCAAGAGAAGAATGA	1740	0.446	MATVATTGIGVGVTKLQQHQKPRQKSLFLGQRLRIRPSGEAQCSSRLNFSNPTRVVKVFALGGEWIDTVHNLFVGVGVGLPCSVMQCGDVIYRSTLPKSNGLTLTVPGVILALGTLSYLWATPGVAPGFFDMFVLAFVERLFRPSYKKDDFALGKKLGEGSFGVVYRVSLANKPSSKEGDLVLKKATEYGAVEIWMNERVRRACASSCADFVYGFLESSSKKSAEYWLIWRFEGDATLADLVQSREFPYNVETLILGEVQDLPKGLERENRIIQTIMRQILFALDGLHSTGIVHRDIKPQNIIFSEESRTFKIIDLGAATDLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSVPVATALSPVLWQLNSPDRFDIYSAGLIFLQMAFPGLRTDNSLIQFNRQLKRCDYDIVAWRKTVEPRCGPELRRGFELLDLDGGIGWELLKSMVRYKARQRLSAKAALAHPYFDREGLLALSFMQTLRLQLLRATQQDYGEAAKWITNLMAKSGTQKDGGFTEAQLQELREIEPKMKASAPRNALASALKLQRKIIRTLNESMDELNRRRKSFWWSRWIPREE	579

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vium6765g00003	579	Coils	Coil	545	565	-	-
Vium6765g00003	579	CDD	STKc_SNT7_plant	155	469	-	-
Vium6765g00003	579	ProSitePatterns	Protein kinases ATP-binding region signature.	157	184	IPR017441	GO:0005524
Vium6765g00003	579	SUPERFAMILY	Protein kinase-like (PK-like)	147	474	IPR011009	-
Vium6765g00003	579	ProSiteProfiles	Protein kinase domain profile.	151	469	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vium6765g00003	579	Gene3D	Transferase(Phosphotransferase) domain 1	260	473	-	-
Vium6765g00003	579	SMART	serkin_6	151	469	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vium6765g00003	579	PANTHER	SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED	53	554	-	-
Vium6765g00003	579	Pfam	Protein kinase domain	153	344	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vium6765g00003	579	FunFam	Serine/threonine-protein kinase STN7, chloroplastic	260	474	-	-

Showing 1 to 10 of 12 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium6765g00003	Vium-Chr6765	25389	33811	Transposed

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium6765g00003	269	470	Core Cell Cycle Gene Families	AT2G38620	30.986	2.06e-17	80.5

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	Group-Pl-4	Vium6765g00003		Pkinase	1.1e-19	CL0016

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium6765g00003	-		-	gmx:100778588	1043.49

Showing 1 to 1 of 1 entries

Previous1Next