Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium6764g00001 | ATTGCAGAACAGCTTCCATGCAAGAATTCAGAAGCAGCCATAATGCTTGATCGTATTCTAAGGCTACTTGCATGTCACTCTGTCATCGACTGCACTGTGGTTGCCGATGAACATGGTCCTCCTCCACAACTGAAGAGGCTCTATGGAATGAACCCTGTGGCCAAACACTTTGCTTCCATAAATGGTGCTGGCTCTTTAGGCCCTTTCATGACACTGGCTCATGACAAGGCCTCGCTTCGCAGCTGGTACCAACTGAAAGATGCAATTCTGGAAGGAGGTATTCCATTCAACAGGGCCCATGGCAAACACTTGTTTGAATACTCTGATATGAACCCAAGCTTCAATAATCTTTTTACTGCAACAATGACCAACCGTGCAACTTTCATAATGAATAAGATTGTGGAATCCTACAAAGGGTTTGAGCACATGAATAGGCTGGTTGATGTTGGAGGTGGCCATGGAATATCTCTTAACGTAATAACTTCAAAATACCCTCACATTAAGGGCATCAACTTTGACTTGCCTCATGTCATACAACAAGCCTCTTCCTACCCTGGAGTGGAGCATGTGGAAGGGGATATGTTTGAAAGTGTGCCAAAAGGAGATGACATTTTTATGATGTGTGTGCTTCATGATTGGAGTGATGAAATGTGCTTTAAGGTGTTGAAGAACTGCTATGATGCAATTCCTAGTGATGGAAAGGTGATTGTGGTGGACGGAATTCATCCATTTGAACCAAAGACAACATCTGCAGCAAAGAACATTTCCCAATTTGATGTGCTGATGATGACTACAAACCCAGGAGGGAAGGAACGAAGTGAAGAGGAATTCATGGCATTGGCAAAAGGAGCTGGATTCAGAGGAATTAGATACACATGCTCTGTCTGTGACTTATGGGTTATGGAGTTTTTCAAGTAG | 918 | 0.4336 | IAEQLPCKNSEAAIMLDRILRLLACHSVIDCTVVADEHGPPPQLKRLYGMNPVAKHFASINGAGSLGPFMTLAHDKASLRSWYQLKDAILEGGIPFNRAHGKHLFEYSDMNPSFNNLFTATMTNRATFIMNKIVESYKGFEHMNRLVDVGGGHGISLNVITSKYPHIKGINFDLPHVIQQASSYPGVEHVEGDMFESVPKGDDIFMMCVLHDWSDEMCFKVLKNCYDAIPSDGKVIVVDGIHPFEPKTTSAAKNISQFDVLMMTTNPGGKERSEEEFMALAKGAGFRGIRYTCSVCDLWVMEFFK | 305 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium6764g00001 | 305 | PANTHER | O-METHYLTRANSFERASE | 1 | 290 | IPR016461 | GO:0008168 | |
| Vium6764g00001 | 305 | Gene3D | - | 1 | 133 | IPR036388 | - | |
| Vium6764g00001 | 305 | Gene3D | Vaccinia Virus protein VP39 | 115 | 295 | IPR029063 | - | |
| Vium6764g00001 | 305 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 65 | 302 | IPR029063 | - | |
| Vium6764g00001 | 305 | SUPERFAMILY | "Winged helix" DNA-binding domain | 1 | 58 | IPR036390 | - | |
| Vium6764g00001 | 305 | PIRSF | O-mtase | 1 | 305 | IPR016461 | GO:0008168 | |
| Vium6764g00001 | 305 | ProSiteProfiles | SAM-dependent O-methyltransferase class II-type profile. | 1 | 305 | IPR016461 | GO:0008168 | |
| Vium6764g00001 | 305 | FunFam | Caffeic acid O-methyltransferase | 58 | 305 | - | - | |
| Vium6764g00001 | 305 | Pfam | O-methyltransferase domain | 82 | 287 | IPR001077 | GO:0008171 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium6764g00001 | Vium-Chr6764 | 6 | 1332 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium6764g00001 | 1 | 305 | Monolignol Biosynthesis Gene Families | AT5G54160 | 51.148 | 2.02e-113 | 330 |