Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium675g00009 ATGGAGCCTATTGAGGAGATCTCTCAAGAATGGATGAGTTGTCTTAGTGAAGTGTACACAGAGGAGGAAGCTGACTTCATGAACCAGCTGCTTGGTAACTGCTCAATCCCAGAACAGTTATACGAAAGTTTGAACATGGAAACAAAAGCTCCAAATGCAGATTCTATCTTGTTTTTACAAGGGAGTGGGTCCTGTGATCATGCTACCAAATATATCTTTCCCACAACAAATGCTGGCAACTGCTCCAACAATTTGGGCCACGTGTCCATTGGTTTTTCCTTCCAAGAGTTGGGTCTTGACTCAGGGAGAGAGAATCTTGCCGACATGGATTTGCAGGATCACAATGCACGCCAAGTATTAGTTTCCGAACCAGAAAAGGATAATACCAGAAGCATGGAGAAATCAGAAAAAAGGTTTAGGAGCTCATTTGAGGGCCCAGAGAACAAGAGGAATGTGAAATCTAAGAAGAATCCAAAACCAGCTTCTTTAAGGAACACTGAAGAGGAAGCAATTCCTGAGCCTCAGAGTCAGACCTTAAACAGTTGTTGTTCAGATGATGACTCCAAAGATTCTAGAGCACTGAAGTTAAGTGGAAAATCAAGATCTAATAGAGACCCTGCAACTGATCCACAGAGCGCGTATGCAAGAAAGAGAAGAGAAAGAATAAACGAAAGACTGAGAATTCTACAGAACCTAGTCCCAAATGGAACTAAGGTGGATATCAGCACAATGCTTGAGGAAGCTGTGCAATATGTGAAGTTTTTACAGCTTCAAATTAAGCTTCTGAGCTCTGATGATCTGTGGATGTACGCTCCCATTGCTTACAATGGAATGAACATTGGCCTGGAACTTAACATCAACATCACAAAACAAGAAAAAAAATGCATATCATAG 894 0.415 MEPIEEISQEWMSCLSEVYTEEEADFMNQLLGNCSIPEQLYESLNMETKAPNADSILFLQGSGSCDHATKYIFPTTNAGNCSNNLGHVSIGFSFQELGLDSGRENLADMDLQDHNARQVLVSEPEKDNTRSMEKSEKRFRSSFEGPENKRNVKSKKNPKPASLRNTEEEAIPEPQSQTLNSCCSDDDSKDSRALKLSGKSRSNRDPATDPQSAYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMNIGLELNINITKQEKKCIS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium675g00009 297 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 206 255 IPR011598 GO:0046983
Vium675g00009 297 Gene3D - 208 269 IPR036638 GO:0046983
Vium675g00009 297 CDD bHLH_AtIND_like 207 269 - -
Vium675g00009 297 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 204 272 IPR036638 GO:0046983
Vium675g00009 297 MobiDBLite consensus disorder prediction 119 154 - -
Vium675g00009 297 MobiDBLite consensus disorder prediction 185 199 - -
Vium675g00009 297 FunFam Basic helix-loop-helix transcription factor 207 264 - -
Vium675g00009 297 Pfam Helix-loop-helix DNA-binding domain 216 256 IPR011598 GO:0046983
Vium675g00009 297 SMART finulus 212 261 IPR011598 GO:0046983
Vium675g00009 297 MobiDBLite consensus disorder prediction 169 184 - -
Vium675g00009 297 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 69 279 - -
Vium675g00009 297 MobiDBLite consensus disorder prediction 114 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium675g00009 Vium-Chr675 15474 17780 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium675g00009 6 287 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 39.227 7.48e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium675g00009 HLH 9.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium675g00009 - - var:108319891 572.007