Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium675g00008 ATGGGGCACTCCAACGTGTGGAACTCTCATCCCAAGAACTATGGGCCTGGTTCTCGCACCTGCCGCGTGTGTGGGAACCCTCATGGATTGATTAGGAAGTATGGGCTCATGTGCTGTAGGCAGTGTTTCCGTAGCAATGCCAAGGAAATTGGCTTCATTAAGTACCGCTGA 171 0.5205 MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR 56
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium675g00008 56 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 13 49 - -
Vium675g00008 56 PANTHER 40S RIBOSOMAL PROTEIN S29 1 56 IPR039744 GO:0003735|GO:0008270
Vium675g00008 56 FunFam 40S ribosomal protein S29 1 56 - -
Vium675g00008 56 Pfam Ribosomal protein S14p/S29e 7 56 IPR001209 GO:0003735|GO:0005840|GO:0006412
Vium675g00008 56 Gene3D 30s Ribosomal Protein S14; Chain N 1 56 IPR043140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium675g00008 Vium-Chr675 13408 14524 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium675g00008 1 56 Cytoplasmic Ribosomal Protein Gene Family AT4G33865 92.857 1.36e-34 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium675g00008 K02980 - gmx:100305476 131.339