Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6740g00004 AATGTTCCTCCATTGCAGAATGGACTTGAAGAATCAGTTAATGATGAAGTGGATGTTCCTTTGAATGAAGAAGTTTATAGCAAACAGATTGATCCTCAAGAAGATGGTAATGATACTCCAAGAGACATATGTAAAAATCCTACACTGAAACTGGTGGGAAAAGTAGTTCATAGGACTAATGAGCACAGGAATGCTAAAAGAAATATTGATCAGGAAAAGGTTTTCAAGAAGCCAGACAAGGTCCTGCAATGTCCTCGCTGCAATAGTTTGGAAACAAAGTTTTGCTACTTCAACAATTACAATGTTAACCAACCTAGACATTTCTGTAAAAATTGCCAAAGGTATTGGACAGCTGGAGGGGCGATTAGAAATGTTCCTGTTGGGGCTGGTAAGCGTAAGAATAAGCACTCAGCTCTGCAGTATTATCAGAAACCTGTGACTCCTGATGGTGAATCTGCGATCCAGACACATTCCAGTGGTTCTAGTGATGATATGATTCTCTCATCTAATGAACTTTCTGTGACTTCAAGACCTATCAGAGAAAGGGAGGAAAATCCTCTTAGTGAATCTGTAGAAACTGTGTTGAGTCTCAATGGCCAAAGAAAATTTGATGTGGACTTTTCCACTGTCAAAGATGATGGTGAGGACCCTTCCAGCTCCTCTATGAGATCTAATGAAATGGAGCAGGTTGGTTTGGCACAACACTTTAATGGTTTAATTCCCTTACATTCATTTCATTATCATCCTGTCCCTTCATGGTCTTATCAATGGAATCCATGTTGGAATGTCAAGGAGTTTAGGTCCAGTAGCACTAGTTACACAGGTTCTCCAACCATGATGGCAGTTTCTGGCTTCTCCATACCAACAGTAATGCCACCTGCAGCACCTTATTCGTATTCAGGTTTCATGTCAAACTTAGCTGGCCAAGAGGAAGAGTCTTCATTGATTGGATCTGCATTTAGTGGCATCTCATTGTCTTCATCTTCTGTCAGCAATAGTACTAGTTCTGGTAATAGATCCCCAGCCTTGGGAAAACATTCCAGAGATGGAAGCACACCAAAGGAAGGTGCAATGAAACAGAACCTTTGGGTGCCTAAGACTGTTAGAATTAACGGTCCAGAAGAGGCTGCAAACAGTTCGATATGGACAACTTTGGGAACAAAATCTGAACAGAACAAAATCATTATAAAAGGAAGTGTCTTTAAATCATTTGAGTCTAAGACAAGTGCTGATGATAATCAAATTCGAAGGACAAACCCTGCTGCTTTCTCACGTTCTGAATCTTTTCAGGAAAGCATGTGA 1302 0.404 NVPPLQNGLEESVNDEVDVPLNEEVYSKQIDPQEDGNDTPRDICKNPTLKLVGKVVHRTNEHRNAKRNIDQEKVFKKPDKVLQCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGAIRNVPVGAGKRKNKHSALQYYQKPVTPDGESAIQTHSSGSSDDMILSSNELSVTSRPIREREENPLSESVETVLSLNGQRKFDVDFSTVKDDGEDPSSSSMRSNEMEQVGLAQHFNGLIPLHSFHYHPVPSWSYQWNPCWNVKEFRSSSTSYTGSPTMMAVSGFSIPTVMPPAAPYSYSGFMSNLAGQEEESSLIGSAFSGISLSSSSVSNSTSSGNRSPALGKHSRDGSTPKEGAMKQNLWVPKTVRINGPEEAANSSIWTTLGTKSEQNKIIIKGSVFKSFESKTSADDNQIRRTNPAAFSRSESFQESM 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6740g00004 433 ProSiteProfiles Zinc finger Dof-type profile. 82 136 IPR003851 GO:0003677|GO:0006355
Vium6740g00004 433 MobiDBLite consensus disorder prediction 146 166 - -
Vium6740g00004 433 MobiDBLite consensus disorder prediction 149 166 - -
Vium6740g00004 433 MobiDBLite consensus disorder prediction 406 433 - -
Vium6740g00004 433 MobiDBLite consensus disorder prediction 1 22 - -
Vium6740g00004 433 PANTHER CYCLIC DOF FACTOR 2 58 432 IPR045174 GO:0003700|GO:0006355
Vium6740g00004 433 MobiDBLite consensus disorder prediction 330 360 - -
Vium6740g00004 433 ProSitePatterns Zinc finger Dof-type signature. 84 120 IPR003851 GO:0003677|GO:0006355
Vium6740g00004 433 Pfam Dof domain, zinc finger 79 136 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6740g00004 Vium-Chr6740 29703 31465 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6740g00004 55 432 C2C2-Dof Transcription Factor Family AT5G39660 35.024 8.89e-55 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium6740g00004 zf-Dof 3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6740g00004 - - vun:114177215 712.22