Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6740g00003 ATGTCCCAAGTTAGAGATTCTGCAATAAAGCTTTTTGGAGCAGATATTCATACTACACATACTCCCATTAAGCCAACCACACCCTTCCCAGATTTACACTCATTGACTCGGATTCAGCCTCTGCCTCAACCCATCATCGTCATGAATGGACTTGAAGAATCAGTTAATGATGAAGTGGATGTTCCTTTGAATGAAGAAGTTTCTAGCAAACAGATTGATCCTCAAGAAGATGGTAATGATACTCCAAGAGACATATGTAAAAATCCTACACTGAAACTGGTGGGAAAAGTAGTTCATAGGACTAATGAGCACAGGAATGCTAAAAGAAATATTGATCAGGAAAAGGTTTTCAAGAAGCCAGACAAGGTCCTGCAATGTCCTCGCTGCAATAGTTTGGAAACAAAGTTTTGCTACTTCAACAATTACAATGTTAACCAACCTAGACATTTCTGTAAAAATTGCCAAAGGTATTGGACAGCTGGAGGGGCGATTAGAAATGTTCCTGTTGGGGCTGGTAAGCGTAAGAATAAGCACTCAGCTCTGCAGTATTATCAGAAACCTGTGACTCCTGATGGTGAATCTGCGATCCAGACACATTCCAGTGGTTCTAGTGATGATATGATTCTCTCATCTAATGAACTTTCTGTGACTTCAAGACCTATCAGAGAAAGGGAGGAAAATCCTCTTAGTGAATCTGTAGAAACTGTGTTGAGTCTCAATGGCCAAAGAAAATTTGATGTGGACTTTTCCACTGTCAAAGATGATGGTGAGGACCCTTCCAGCTCCTCTATGAGATCTAATGAAATGGAGCAGGTTGGTTTGGCACAACACTTTAATGGTTTAATTCCCTTACATTCATTTCATTATCATCCTGTCCCTTCATGGTCTTATCAATGGAATCCATGTTGGAATGTCAAGGAGTTTAGGTCCAGTAGCACTAGTTACACAGGTTCTCCAACCATGATGGCAGTTTCTGGCTTCTCCATACCAACAGTAATGCCACCTGCAGCACCTTATTCGTATTCAGGTTTCATGTCAAACTTAGCTGGCCAAGAGGAAGAGTCTTCATTGATTGGATCTGCATTTAGTGGCATCTCATTGTCTTCATCTTCTGTCAGCAATAGTACTAGTTCTGGTAATAGATCCCCAGCCTTGGGAAAACATTCCAGAGATGGAAGCACACCAAAGGAAGGTGCAATGAAACAGAACCTTTGGGTGCCTAAGACTGTTAGAATTAACGGTCCAGAAGAGGCTGCAAACAGTTCGATATGGACAACTTTGGGAACAAAATCTGAACAGAACAAAATCATTATAAAAGGAAGTGTCTTTAAATCATTTGAGTCTAAGACAAGTGCTGATGATAATCAAATTCGAAGGACAAACCCTGCTGCTTTCTCACGTTCTGAATCTTTTCAGGAAAGCATGTGA 1428 0.4076 MSQVRDSAIKLFGADIHTTHTPIKPTTPFPDLHSLTRIQPLPQPIIVMNGLEESVNDEVDVPLNEEVSSKQIDPQEDGNDTPRDICKNPTLKLVGKVVHRTNEHRNAKRNIDQEKVFKKPDKVLQCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGAIRNVPVGAGKRKNKHSALQYYQKPVTPDGESAIQTHSSGSSDDMILSSNELSVTSRPIREREENPLSESVETVLSLNGQRKFDVDFSTVKDDGEDPSSSSMRSNEMEQVGLAQHFNGLIPLHSFHYHPVPSWSYQWNPCWNVKEFRSSSTSYTGSPTMMAVSGFSIPTVMPPAAPYSYSGFMSNLAGQEEESSLIGSAFSGISLSSSSVSNSTSSGNRSPALGKHSRDGSTPKEGAMKQNLWVPKTVRINGPEEAANSSIWTTLGTKSEQNKIIIKGSVFKSFESKTSADDNQIRRTNPAAFSRSESFQESM 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6740g00003 475 MobiDBLite consensus disorder prediction 188 208 - -
Vium6740g00003 475 MobiDBLite consensus disorder prediction 191 208 - -
Vium6740g00003 475 Pfam Dof domain, zinc finger 121 178 IPR003851 GO:0003677|GO:0006355
Vium6740g00003 475 ProSitePatterns Zinc finger Dof-type signature. 126 162 IPR003851 GO:0003677|GO:0006355
Vium6740g00003 475 MobiDBLite consensus disorder prediction 448 475 - -
Vium6740g00003 475 PANTHER CYCLIC DOF FACTOR 2 1 474 IPR045174 GO:0003700|GO:0006355
Vium6740g00003 475 ProSiteProfiles Zinc finger Dof-type profile. 124 178 IPR003851 GO:0003677|GO:0006355
Vium6740g00003 475 MobiDBLite consensus disorder prediction 372 407 - -
Vium6740g00003 475 MobiDBLite consensus disorder prediction 66 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6740g00003 Vium-Chr6740 25625 28752 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6740g00003 97 474 C2C2-Dof Transcription Factor Family AT5G39660 35.024 1.46e-54 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium6740g00003 zf-Dof 3.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6740g00003 - - vun:114177215 801.201