Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6740g00001 ATGGAACCGGGAACCCCATTAGAGAGTTCTTCCAATTTTGACTCTTTAATGTTCAATTCATCATCACACAGAAGTACCGTGTCCATTCAGTCCAGGAGTTCTGGTGTCAACAACTCCACCAGGGAAGTGAGTTTTGGCCAGTTAGGATCCAAGCCAGCTAGATATGGGTCAACGGGTGCTGATTCGGAGTTTCTCAGTATGTCTCAGAAGGAAATACGTGATGAGGATGCAAGGTTGGTTTATGTTGATGATCCTGAGAAGACAAATGAAAAGCTTGAATTTGCAGGGAATTCGATTCTTACTGGAAAGTACTCCATCCTCACCTTTCTCCCAAGGAATTTGTTTGAACAGTTTCATAGAGTTGCTTATATTTACTTCCTTGCAATTGCCATTCTTAATCAGCTCCCTCAGTTAGCTGTTTTTGGAAGGGGTGTTTCCATTATGCCATTGGCCATTGTGCTTCTGGTTACTGCTGTGAAGGATGCATATGAGGACTGGAGGAGGCACAAGTCTGACAAAATTGAGAACAACAGGTTCGGATTGGTTTTGGTTAATGATCAGTTTGTGGAGAAGAAGTGGAAGCACATTAGAGTTGGGGAAGTTATTAAAATTAGAGCAAATGAAACCATTCCTTCTGATGTTGTGCTGCTCTCGACTAGTGACCCCACTGGGGTTGCGTATGTGCAGACTCTTAATCTGGATGGAGAGTCTAATTTGAAGACTAGGTATGCAAAGCAAGAGACTCAATCTAAGTTGCCAGAAAAGGAGAAGTTAAATCTGTTGATTAAGTGTGAGAAACCCAATAGGAATATATATGGGTTTCAGGGTAATATTGAAGTTGATGGAAAAAGGTTGTCTCTTGGATCCTCTAACATTGTTCTTAGAGGCTGTGAGCTCAAGAATACCAATTGGGCATTGGGAGTTGCCGTGTATTGCGGCCCTGAGACCAAAGCGATGCTCAACAGCTCAGGAGCTCCATCCAAAAGGAGTCTTCTTGAGACTCGCATGAACTCTGAGATCATTATGCTTTCTTTCTTTCTTATAGCTTTATGTGCAGTGACCTCAGTTTGTGCTGCTGTTTGGTTAAAGCGCCACAAGGATGAGTTGAATCTCTCACCTTATTATAGGAAGCTGGATTTTTCAAAGGGGGAAGAGGACAACTATAAATATTATGGATGGGGACCGGAAATTGTTTTCACTTTCCTCATGTCAGTCATAGTGTACCAGGTTATGATTCCCATATCCTTGTACATTTCGATGGAGCTTGTCCGTGTTGGTCAGGCATACTTCATGATCGGAGATTCGAGAATGTATGATAAGGCAACAGAGTCAAGATTTCAGTGCAGAGCTTTGAATATTAACGAAGATTTAGGCCAAATTAAATATGTCTTTTCTGATAAAACTGGCACACTGACTGAGAACAAGATGGAGTTTAAATGCGCAAGCATCTTGGGGTTTGATTACAGTTCAACGGCTGCCAATCTTGAGAATGAGCAAGTTGAATACTCTGTTCAAGCGGATGGGACGGTCTTTAAGCCAAAGATGATGGTGAAAGTTAATCAAGAGCTTTTGCAATTATCAAAGAGTGGATTTACAAATGAAGAGGGGAAACAGATTTATGATTTCTTTCTAGCATTGGCAGCCTGCAATACCATTGTGCCTCTTGTTGTTGACACATCCGACCCTATGGTCAAGCTGATAGATTACCAAGGGGAATCACCGGATGAGCAGGCATTGACTTATGCTGCCGCTGCGTATGGTTTTATGCTAATTGAACGAACCTCAGGTCACATAGTGCTTGATATTCGAGGAGAAAGGAAAAAGTTCAATGTCTTAGGTTTGCATGAATTTGATAGTGATCGAAAAAGGATGTCAGTTATACTGGGGTACAGTGACAATTGTGTGAAACTTTTTGTTAAAGGGGCAGATACATCCATGCTTAGATTGATTGACAAATCATTGAACACAGACATACTACAAGCAACCGAAACCCATCTTCGTTCTTATTCCTCTGTGGGTTTGAGGACACTTGTTGTTGGGATCCGGGACTTAGATGCTTCAGAATTTGAGCAATGGCACACTGCCTTTGAGGTAGCAAGTACTGCTTTGATGGGTAGGGCAGCTTTGCTTCGCAAGGTCGCTATCAATATAGAGAAGAATCTCTGTATATTGGGTGCAACTGCCATTGAAGATAAACTGCAGCAAGGTGTGCCAGAATCTATTGAGTCTCTAAGGACTGCAGGTATTAAAGTATGGGTCTTGACTGGGGACAAACAGGAAACTGCCATATCTATTGGATACTCCTCTAAGCTCCTAACGAGCAGCATGATTCAAATTATAATTAATACCAACAATAGAGAATCATGTAGAAGACGTTTACAAGATGCCCTTGTCATGTCTAGGCAAAACATGACTGTGCCTAGGGTTACTCACAATTCAGGAGGAAGTTCAGGATCTGTTTTAACTCTAGCCTTGATTATTGATGGTACCAGCCTTGTTTATATTCTTGACAGCGAGCTTGAAGATGAATTCTTTCAACTTGCAATTAGATGTTCTGTTGTTCTCTGTTGTCGAGTGGCTCCACTACAGAAAGCTGGGATTGTTGCCCTTGTGAAGAAGAGGACAGATGACATGACTCTAGCCATTGGAGATGGTGCTAATGATGTATCGATGATCCAAATGGCTGATATTGGAGTTGGAATCAGTGGACAGGAAGGTCGGCAAGCTGTAATGGCTTCAGATTTTGCAATGGGGCAGTTTAGGTTTTTAGTTCCTCTCTTGTTGGTACATGGACATTGGAATTACCAACGACTGGGTTACATGATAATATACAACTTTTACAGAAATGCTATCTTTGTTCTTGTCTTATTTTGGTATGTGCTCTTTACTGCCTTCACATTGACAACAGCTATAAATGAATGGAGCAGCATGCTATACTCAATAATCTACACTGCATTGCCAACCATTGTTGTTGGTATTCTCGACAAGGATCTGAGTAAAAGGACTCTCCTAAAGAATCCTCAGCTTTATGGGGCCGGGCTGAGAAATGAGGCCTACAACAAAAAGCTGTTTTGGTTGACAATGGCCGATACTTTGTGGCAAAGCATTGCTGTCTTCTTTGCTCCCCTTATTGCATATTGGGGAACCACTGTAGACGTAGCAAGCATAGCCATTTGGGGCTCTATTGTTGCAACTTTCATATCTGTCATGGTTATTGATGCTATACCAGCCTTTCCTGGTTACTGGGCTATCTTTGATGTTGGAGGCACTGCATTGTTCTGGTTATGTTTGGTTGGAATTGTAATAGCCGCATTACTTCCCAGATTAGTTGTAAAATACGTTCACCAGTATTATTTTCCCAGTGATATTCAGATTTCAAGAGAAACTGAGAAGTTTGGGAATCCAAGAGACAATGGAGGAAGACAGATAGAAATGCTTCCTGTTTCAGATGGTCCAGTAAGATAG 3465 0.4167 MEPGTPLESSSNFDSLMFNSSSHRSTVSIQSRSSGVNNSTREVSFGQLGSKPARYGSTGADSEFLSMSQKEIRDEDARLVYVDDPEKTNEKLEFAGNSILTGKYSILTFLPRNLFEQFHRVAYIYFLAIAILNQLPQLAVFGRGVSIMPLAIVLLVTAVKDAYEDWRRHKSDKIENNRFGLVLVNDQFVEKKWKHIRVGEVIKIRANETIPSDVVLLSTSDPTGVAYVQTLNLDGESNLKTRYAKQETQSKLPEKEKLNLLIKCEKPNRNIYGFQGNIEVDGKRLSLGSSNIVLRGCELKNTNWALGVAVYCGPETKAMLNSSGAPSKRSLLETRMNSEIIMLSFFLIALCAVTSVCAAVWLKRHKDELNLSPYYRKLDFSKGEEDNYKYYGWGPEIVFTFLMSVIVYQVMIPISLYISMELVRVGQAYFMIGDSRMYDKATESRFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFKCASILGFDYSSTAANLENEQVEYSVQADGTVFKPKMMVKVNQELLQLSKSGFTNEEGKQIYDFFLALAACNTIVPLVVDTSDPMVKLIDYQGESPDEQALTYAAAAYGFMLIERTSGHIVLDIRGERKKFNVLGLHEFDSDRKRMSVILGYSDNCVKLFVKGADTSMLRLIDKSLNTDILQATETHLRSYSSVGLRTLVVGIRDLDASEFEQWHTAFEVASTALMGRAALLRKVAINIEKNLCILGATAIEDKLQQGVPESIESLRTAGIKVWVLTGDKQETAISIGYSSKLLTSSMIQIIINTNNRESCRRRLQDALVMSRQNMTVPRVTHNSGGSSGSVLTLALIIDGTSLVYILDSELEDEFFQLAIRCSVVLCCRVAPLQKAGIVALVKKRTDDMTLAIGDGANDVSMIQMADIGVGISGQEGRQAVMASDFAMGQFRFLVPLLLVHGHWNYQRLGYMIIYNFYRNAIFVLVLFWYVLFTAFTLTTAINEWSSMLYSIIYTALPTIVVGILDKDLSKRTLLKNPQLYGAGLRNEAYNKKLFWLTMADTLWQSIAVFFAPLIAYWGTTVDVASIAIWGSIVATFISVMVIDAIPAFPGYWAIFDVGGTALFWLCLVGIVIAALLPRLVVKYVHQYYFPSDIQISRETEKFGNPRDNGGRQIEMLPVSDGPVR 1154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6740g00001 1154 ProSitePatterns E1-E2 ATPases phosphorylation site. 466 472 IPR018303 -
Vium6740g00001 1154 SUPERFAMILY Calcium ATPase, transmembrane domain M 94 1120 IPR023298 -
Vium6740g00001 1154 CDD P-type_ATPase_APLT_Dnf-like 96 1042 - -
Vium6740g00001 1154 FunFam Phospholipid-transporting ATPase 152 321 - -
Vium6740g00001 1154 Gene3D - 563 702 IPR023299 GO:0000166
Vium6740g00001 1154 Pfam Phospholipid-translocating ATPase N-terminal 80 145 IPR032631 -
Vium6740g00001 1154 MobiDBLite consensus disorder prediction 1130 1154 - -
Vium6740g00001 1154 PRINTS Sodium/potassium-transporting ATPase signature 457 478 - -
Vium6740g00001 1154 PRINTS Sodium/potassium-transporting ATPase signature 959 979 - -
Vium6740g00001 1154 Gene3D - 720 922 IPR023214 -
Vium6740g00001 1154 Pfam Phospholipid-translocating P-type ATPase C-terminal 910 1050 IPR032630 -
Vium6740g00001 1154 Pfam Phospholipid-translocating P-type ATPase C-terminal 1053 1121 IPR032630 -
Vium6740g00001 1154 SFLD Haloacid Dehalogenase 448 933 - -
Vium6740g00001 1154 SUPERFAMILY Calcium ATPase, transduction domain A 178 318 IPR008250 -
Vium6740g00001 1154 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 74 1131 - -
Vium6740g00001 1154 Gene3D - 152 321 - -
Vium6740g00001 1154 SUPERFAMILY HAD-like 451 923 IPR036412 -
Vium6740g00001 1154 FunFam Phospholipid-transporting ATPase 720 922 - -
Vium6740g00001 1154 NCBIfam phospholipid-translocating P-type ATPase 94 1051 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Vium6740g00001 1154 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 470 736 IPR023299 GO:0000166
Vium6740g00001 1154 FunFam Phospholipid-transporting ATPase 568 701 - -
Vium6740g00001 1154 MobiDBLite consensus disorder prediction 24 51 - -
Vium6740g00001 1154 MobiDBLite consensus disorder prediction 24 46 - -
Vium6740g00001 1154 SFLD p-type atpase 448 933 IPR044492 -
Vium6740g00001 1154 PRINTS P-type cation-transporting ATPase superfamily signature 882 901 - -
Vium6740g00001 1154 PRINTS P-type cation-transporting ATPase superfamily signature 464 478 - -
Vium6740g00001 1154 Pfam Cation transport ATPase (P-type) 572 647 - -
Vium6740g00001 1154 NCBIfam HAD-IC family P-type ATPase 396 485 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium6740g00001 1154 NCBIfam HAD-IC family P-type ATPase 852 968 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6740g00001 Vium-Chr6740 13259 19420 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6740g00001 23 1154 Primary Pumps ATPases AT5G04930 67.040 0.0 1626
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6740g00001 K14802 - gmx:100784988 1988.39