Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium673g00002 ATGCTGTGTCCAGATGTTGGTCCTGTTGTTGTCTGCTTGTCGGGGATCAGTTGTCCTATAACATTATTCCATAAACAGGTGGGCCTGGCTGATAAAATCAACAGTATTGTGAGAAGTCTTTCTGGTGGCATGAAGAGGAAATTGTCTCTTGGAATTGCATTGATTGGCAACAGTAAGGTTATAGTCCTTGATGAACCTACTAGTGGAATGGATCCATACTCAATGCGCTTGACTTGGCAGTTAATAAAAAAAATTAAGAAGGGCAGGATAATTTTGCTAACTACACATTCTATGGATGAAGCGGATGAATTAGGTGACCGGATAGCGATCATGGCCAACGGATCTCTGAAATGTTGCGGAAGTTCCCTTTTCTTGAAGCATCATTATGGAGTTGGTTATACTCTAACCCTAGTGAAGTCAGCTCCCACTGCTTCCATTGCTAGTGATATAGTATACCGTCATGTTCCAAATGCAACATGTGTAAGCGAGGTTGGAACTGAGATTTCTTTTAGGCTTCCAATGGCATCCTCATCAGCCTTTGAGAGGATGTTTAGGGAAATTGAAGGTTGCATGAAAAAACCAGTTTCGAACATGGAATTGAATGGTAAAATTGAAAAAGACAATATTGGTATTGAAAGCTATGGCATATCTGTAACAACCCTGGAAGAGGTATTTTTAAGAGTTGCAGGATGTGATGCTGATGAGGTTGAATGCTTTGAAGAAAATAACCATTCTCTGATATTAGACTCTGTGGCTTTACTTCCTACTAATGATGATGCTTCCACAAAAATAAGTTGTCTTAAAATTCTTGGAAATTATAAGAGGATTCCGGGTTTGGTGTCTACCATGTTGGGAAGAGCTTGTCGATTAATTTTTGCTACATTTTTTAGTTTTATCAACTTCTTGGGTGTGCAGTGCTGCAGTTGTTGTCTCATTACTAGGTCAACATTTTGGCAACATTTTAAAGCCTTATTCATTAAAAGGGCAATATCTGCTCGCAGAGATCACAAAACCATTGTTTTCCAGCTAATGATTCCTACTCTCTTCCTGTTTGTCGGTCTTCTATTTCTTAAGCTCAAGCCACATCCTGATCAGCAATCGCTGACCCTTTCAACTTCTCACTTTAATCCTCTATTGAGTGGTGGTGGTGGGGGAGGTCCAATTCCATTTAATTTTTCTTTGCCAATTGCTGAAAAGGTAGCACAAAATGTCATGGGAGGTTGGATACAGAGGTTCAAGTCGAGCTCATACAGATTCCCTGATTCAGAAAAAGCATTGGCTGATGCAGTGGAAGTAGCGGGACCAACACTGGGACCTGCTCTACTTTCTATGAGTGAATATTTGATGTCTAGTTTTAATGAATCCTACCAATCTAGGTATGGGGCAATTGTGATGGATGATCAAAGTAATGATGGAAGCTTAGGATACACTGTATTACACAACTGTTCTTGTCAACATGCTGCTCCCACCTTTATCAATTTGATGAATTCTGCGATTCTTAGGCTTGCATCTCAAGACACAAATATGACAATTCGACACGCAACCACCCTCTGCCAAACGACACAAAGCCAGCGCTTACAACGTCATGATCTGGATGCTTTCTCTGCTGCAGTTATTGTCAACATTGCTTTCTCTTTTATACCTGCCTCATTTGCCGTTTCAATTGTTAAGGTTTCTATCCTGTCATATTGCTCTAAATATATTTGGGACTTGTAGCTCTTGGTTCCTGCCTCGGTTGCCATAGTTCTGTTTTATATCTTTGGTCTGGAACAGTTTGTCGGAGGGGTTTCTTTGCTACCAACAATCCTCATGCTCTTGGAATATGGACTTGCAATTGCATCATCAACCTATTGCCTTACATTTTTCTTTTTTGACCACACCATGGCTCAGAACGTGGTTCTGTTGATTCACTTTTTCACCGGATTGATACTAATGGTTATCTCATTCATTATGGGACTCATGCCATCAACAATGACTACCAATTCTTTTCTTAAGAATTTTTTCAGAATATCTCCTGGATTTTGTTTTGCGGATGGTCTTGCTTCATTAGCTCTTTTGCGGCAAGGAATGAAAGATAAAACAAGTGATGGAGTGTTTGATTGGAATGTTACTGGGGCTTCCATCTGTTATCTAGCTGTTGAGAGCTTTAGTTATTTTCTGTTGACACTTGCACTTGAAATTTTACCTTCTATCAAATTGACTTCATTCATGATCAAAAAGTGGTGGGAAAAAATTAATATCTTCCGGCATGTTAGTCCTTATTTGGAACCTCTGCTGGAATCTTCCTCTGAAACTGTTGTTACGGACTTCGATGAAGATGTAGATGTAAAAGCAGAAAGAAATAGAGTACTTTCAGGTTCTCTTGACAATTCCATTATCTACCTGCGCAATCTTCGCAAGGTATATTTTGAGGAGAAGCATCATGGAAGAAAGGTTGCAGTAGATTCTTTAACTTTCTCAGTTCAGGAAGGAGAATGTTTTGGCTTTTTAGGAACAAATGGAGCTGGAAAGACCACAACTCTTTCTATGCTATGTGGTATGTCAGAATTCTGA 2553 0.396 MLCPDVGPVVVCLSGISCPITLFHKQVGLADKINSIVRSLSGGMKRKLSLGIALIGNSKVIVLDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEADELGDRIAIMANGSLKCCGSSLFLKHHYGVGYTLTLVKSAPTASIASDIVYRHVPNATCVSEVGTEISFRLPMASSSAFERMFREIEGCMKKPVSNMELNGKIEKDNIGIESYGISVTTLEEVFLRVAGCDADEVECFEENNHSLILDSVALLPTNDDASTKISCLKILGNYKRIPGLVSTMLGRACRLIFATFFSFINFLGVQCCSCCLITRSTFWQHFKALFIKRAISARRDHKTIVFQLMIPTLFLFVGLLFLKLKPHPDQQSLTLSTSHFNPLLSGGGGGGPIPFNFSLPIAEKVAQNVMGGWIQRFKSSSYRFPDSEKALADAVEVAGPTLGPALLSMSEYLMSSFNESYQSRYGAIVMDDQSNDGSLGYTVLHNCSCQHAAPTFINLMNSAILRLASQDTNMTIRHATTLCQTTQSQRLQRHDLDAFSAAVIVNIAFSFIPASFAVSIVKVSILSYWXSKYIWDLXLLVPASVAIVLFYIFGLEQFVGGVSLLPTILMLLEYGLAIASSTYCLTFFFFDHTMAQNVVLLIHFFTGLILMVISFIMGLMPSTMTTNSFLKNFFRISPGFCFADGLASLALLRQGMKDKTSDGVFDWNVTGASICYLAVESFSYFLLTLALEILPSIKLTSFMIKKWWEKINIFRHVSPYLEPLLESSSETVVTDFDEDVDVKAERNRVLSGSLDNSIIYLRNLRKVYFEEKHHGRKVAVDSLTFSVQEGECFGFLGTNGAGKTTTLSMLCGMSEF 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium673g00002 851 Pfam ABC transporter 816 849 IPR003439 GO:0005524
Vium673g00002 851 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 144 IPR027417 -
Vium673g00002 851 Gene3D - 18 178 IPR027417 -
Vium673g00002 851 Gene3D - 771 851 IPR027417 -
Vium673g00002 851 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 797 848 IPR027417 -
Vium673g00002 851 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 774 850 IPR026082 GO:0016020|GO:0055085|GO:0140359
Vium673g00002 851 Pfam AAA domain, putative AbiEii toxin, Type IV TA system 38 97 IPR003959 GO:0005524|GO:0016887
Vium673g00002 851 Pfam ABC-2 family transporter protein 338 724 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium673g00002 Vium-Chr673 6859 22289 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium673g00002 40 182 Calmodulin-binding Proteins AT2G36910 25.517 1.51e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium673g00002 K05643 - gmx:100803263 1429.85