Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium673g00001 ATAACATTATTCCATAAACAGGTGGGCCTGGCTGATAAAATCAACAGTATTGTGAGAAGTCTTTCTGGTGGCATGAAGAGGAAATTGTCTCTTGGAATTGCATTGATTGGCAACAGTAAGGTTATAGTCCTTGATGAACCTACTAGTGGAATGGATCCATACTCAATGCGCTTGACTTGGCAGTTAATAAAAAAAATTAAGAAGGGCAGGATAATTTTGCTAACTACACATTCTATGGATGAAGCGGATGAATTAGGTGACCGGATAGCGATCATGGCCAACGGATCTCTGAAATGTTGCGGAAGTTCCCTTTTCTTGAAGCATCATTATGGAGTTGGTTATACTCTAACCCTAGTGAAGTCAGCTCCCACTGCTTCCATTGCTAGTGATATAGTATACCGTCATGTTCCAAATGCAACATGTGTAAGCGAGGTTGGAACTGAGATTTCTTTTAGGCTTCCAATGGCATCCTCATCAGCCTTTGAGAGGATGTTTAGGGAAATTGAAGGTTGCATGAAAAAACCAGTTTCGAACATGGAATTGAATGGTAAAATTGAAAAAGACAATATTGGTATTGAAAGCTATGGCATATCTGTAACAACCCTGGAAGAGGTATTTTTAAGAGTTGCAGGATGTGATGCTGATGAGGTTGAATGCTTTGAAGAAAATAACCATTCTCTGATATTAGACTCTGTGGCTTTACTTCCTACTAATGATGATGCTTCCACAAAAATAAGTTGTCTTAAAATTCTTGGAAATTATAAGAGGATTCCGGGTTTGGTGTCTACCATGTTGGGAAGAGCTTGTCGATTAATTTTTGCTACATTTTTTAGTTTTATCAACTTCTTGGGTGTGCAGTGCTGCAGTTGTTGTCTCATTACTAGGTCAACATTTTGGCAACATTTTAAAGCCTTATTCATTAAAAGGGCAATATCTGCTCGCAGAGATCACAAAACCATTGTTTTCCAGCTAATGATTCCTACTCTCTTCCTGTTTGTCGGTCTTCTATTTCTTAAGCTCAAGCCACATCCTGATCAGCAATCGCTGACCCTTTCAACTTCTCACTTTAATCCTCTATTGAGTGGTGGTGGTGGGGGAGGTCCAATTCCATTTAATGTTTCTTTGCCAATTGCTGAAAAGGTAGCACAAAATGTCATGGGAGGTTGGATACAGAGGTTCAAGTCGAGCTCATACAGATTCCCTGATTCAGAAAAAGCATTGGCTGATGCAGTGGAAGTAGCGGGACCAACACTGGGACCTGCTCTACTTTCTATGAGTGAATATTTGATGTCTAGTTTTAATGAATCCTACCAATCTAGGTGTGAAAACTTGAATTTCTTGCTTCATTTTTAG 1353 0.3939 ITLFHKQVGLADKINSIVRSLSGGMKRKLSLGIALIGNSKVIVLDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEADELGDRIAIMANGSLKCCGSSLFLKHHYGVGYTLTLVKSAPTASIASDIVYRHVPNATCVSEVGTEISFRLPMASSSAFERMFREIEGCMKKPVSNMELNGKIEKDNIGIESYGISVTTLEEVFLRVAGCDADEVECFEENNHSLILDSVALLPTNDDASTKISCLKILGNYKRIPGLVSTMLGRACRLIFATFFSFINFLGVQCCSCCLITRSTFWQHFKALFIKRAISARRDHKTIVFQLMIPTLFLFVGLLFLKLKPHPDQQSLTLSTSHFNPLLSGGGGGGPIPFNVSLPIAEKVAQNVMGGWIQRFKSSSYRFPDSEKALADAVEVAGPTLGPALLSMSEYLMSSFNESYQSRCENLNFLLHF 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium673g00001 450 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 6 273 IPR026082 GO:0016020|GO:0055085|GO:0140359
Vium673g00001 450 Pfam AAA domain, putative AbiEii toxin, Type IV TA system 19 78 IPR003959 GO:0005524|GO:0016887
Vium673g00001 450 Gene3D - 2 162 IPR027417 -
Vium673g00001 450 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 125 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium673g00001 Vium-Chr673 2344 6897 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium673g00001 21 130 Calmodulin-binding Proteins AT2G36910 28.571 1.08e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium673g00001 K05643 - vum:124820005 874.774