Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6736g00002 ATGTTGGAGGGAGAAGCTGCTGGCACGTGGGCACGCGCGTGCGACACGTGCCGCTCCGCAGCCTCCACCGTCTTCTGCCGCGCCCACAACGCCTACCTCTGCGCCTCCTGCGATGGCCGCGTGCACCACGCGTCCTCCTCCTCTTGGCACGAGCGTGTGTGGGTCTGCGAGGCCTGCGAACGGGCCCCCGCGGCGTTCCTCTGCAAGGCCGACGCCGCCTCCCTCTGCTCCTCATGCGACGCCGATATCCACTCCGCGAACCCTCTCGCAAGCCGCCACCACCGAGTCCCCATCCTCCCCATCGCTGCCGGCCACCACTCTCACGTCGAAATCGACGTCGCCGACGACGACGATGGTGCTGACGTGGATGACGAAGACGAAACCGCTTCCTGGCTCTTGCTCAACCCTGTCAAAACTGGCACTGTCCCTAATAGCAACAATAATGGGTTCTTGTACAGTGGTGAGGTTGACGAGTATTTGGACCTTGTTGATAACTGTAACTCTTGTGGTGACAACAACCACTTCGCTGCAACTACCACTACTGCCACTACTGCTGATCATTACACTCAGCACCATCATTTTGACGGTGTTTCTCAGAAGAGTTATGCCGGGGACAGCGTGGTTCCGGTTCAGCAGCACCACCATTTTCAGCTTGGCTTGGAGTTCGAGAATTCTAAAGCTGCCTTCAGTTACAATGGTTCTATTACTCAAAGTATTTCAGTTTCATCAATGGATATTGGTGTTGTACCTGAATCACCGATGAGGGATGTCTCAATTTCCCATACAAGACCCCCCAAAGGGACGATTGACCTATTTTCTGGACCTCCCATTCAGATGCCTTCCCACTTTTCTCCAATGGACAGGGAGGCCAGAGTCCTAAGGTACAGAGAGAAAAAGAAGACAAGAAAATTTGAGAAAACTATCAGGTATGCCTCAAGGAAGGCCTATGCAGAGACCAGACCCCGAATAAAGGGTCGTTTTGCCAAGAGAACAGATGTGGAAGCTGAAGTGGATCAGATGTTCTCCACAACACTAATTACAGAAGTTGGATATGGAATTGTTCCCTCTTTCTGA 1074 0.5335 MLEGEAAGTWARACDTCRSAASTVFCRAHNAYLCASCDGRVHHASSSSWHERVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHHRVPILPIAAGHHSHVEIDVADDDDGADVDDEDETASWLLLNPVKTGTVPNSNNNGFLYSGEVDEYLDLVDNCNSCGDNNHFAATTTTATTADHYTQHHHFDGVSQKSYAGDSVVPVQQHHHFQLGLEFENSKAAFSYNGSITQSISVSSMDIGVVPESPMRDVSISHTRPPKGTIDLFSGPPIQMPSHFSPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTTLITEVGYGIVPSF 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6736g00002 357 Pfam CCT motif 288 330 IPR010402 GO:0005515
Vium6736g00002 357 Pfam B-box zinc finger 53 98 IPR000315 GO:0008270
Vium6736g00002 357 CDD Bbox1_BBX-like 13 55 - -
Vium6736g00002 357 CDD Bbox1_BBX-like 55 98 - -
Vium6736g00002 357 ProSiteProfiles Zinc finger B-box type profile. 9 55 IPR000315 GO:0008270
Vium6736g00002 357 SMART bboxneu5 51 98 IPR000315 GO:0008270
Vium6736g00002 357 SMART bboxneu5 9 48 IPR000315 GO:0008270
Vium6736g00002 357 ProSiteProfiles CCT domain profile. 288 330 IPR010402 GO:0005515
Vium6736g00002 357 ProSiteProfiles Zinc finger B-box type profile. 51 98 IPR000315 GO:0008270
Vium6736g00002 357 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 14 344 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6736g00002 Vium-Chr6736 10650 13125 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6736g00002 1 357 C2C2-CO-like Transcription Factor Family AT3G02380 54.960 2.21e-126 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vium6736g00002 zf-B_box 3.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6736g00002 K12135 - gmx:100301886 585.104