Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6735g00001 ATGGAGACTGAAGCTGACTCAAGAGATACTTCACTCATTCTGCTCAAACAAGGAGCTGAGGCTAGGGTTTTTGAGTCTTCTTTTGTGGGAAGGAAATCCGTTGTCAAGGAACGCTTCTCAAAGAAGTACAGGCATCCAACTTTGGATTCTAAATTGACACTGAAGCGCTTAAATGCGGAGGCTAGGTGCATGACCAAAGCAAGGCGACTTGGTGTTTGTACTCCTGTGCTGTATGCTGTGGATCACGTGTTGCACACTTTAACATTTGAATATGTTACTGGCTCTTCAGTCAAAGATGTGTTCCTTGAAATCGGGTCACGTGGGACTGATAAAGAGTGGCTGGACAATATAGCATCCCAAATTGGTGAAGCAATTGGGAAGTTACATGATGGTGGTCTTATTCATGGTGATTTAACAACATCAAACATGTTGTTGAAGAGTGATACCAAGCAGTTGGTTCTTATTGATTTTGGTTTGAGCTTCACTTCAACTCTTCCAGAAGATAAAGCTGTTGATTTGTATGTTCTGGAAAGATCTCTTATCTCAATGCATTCATCATGTGGGAATGTGATGGATCAAATTCTTGCTGCATACAGGAAGTCGTCAAAACAGTGGTCATCCACATTAAACAAGCTAGCACAAGTGCGACAAAGAGGGCGGAAGAGGACCATGGTTGGATGA 681 0.4244 METEADSRDTSLILLKQGAEARVFESSFVGRKSVVKERFSKKYRHPTLDSKLTLKRLNAEARCMTKARRLGVCTPVLYAVDHVLHTLTFEYVTGSSVKDVFLEIGSRGTDKEWLDNIASQIGEAIGKLHDGGLIHGDLTTSNMLLKSDTKQLVLIDFGLSFTSTLPEDKAVDLYVLERSLISMHSSCGNVMDQILAAYRKSSKQWSSTLNKLAQVRQRGRKRTMVG 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6735g00001 226 ProSiteProfiles Protein kinase domain profile. 9 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6735g00001 226 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 5 226 IPR022495 GO:0004674
Vium6735g00001 226 FunFam TP53-regulating kinase isoform X1 20 92 - -
Vium6735g00001 226 Pfam Protein kinase domain 39 162 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6735g00001 226 SUPERFAMILY Protein kinase-like (PK-like) 14 175 IPR011009 -
Vium6735g00001 226 ProSitePatterns Tyrosine protein kinases specific active-site signature. 133 145 IPR008266 GO:0004672|GO:0006468
Vium6735g00001 226 FunFam Protein kinase superfamily protein 107 223 - -
Vium6735g00001 226 Gene3D Phosphorylase Kinase; domain 1 20 92 - -
Vium6735g00001 226 SMART serkin_6 9 225 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6735g00001 226 Gene3D Transferase(Phosphotransferase) domain 1 107 223 - -
Vium6735g00001 226 NCBIfam KEOPS complex kinase/ATPase Bud32 18 220 IPR022495 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6735g00001 Vium-Chr6735 9474 12534 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6735g00001 2 160 MAP Kinase Kinase Kinase AT5G66710 26.994 4.62e-07 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vium6735g00001 Pkinase 6.1e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6735g00001 K08851 - gmx:100782376 410.223