Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6732g00013 ATGGAGGGAACAGGGTCAGGATCAGGTTCGTCAAGTCCGGCAGCTCCGGCAGGTCCAGCACCGTTCCTACTGAAGACATACGAGATGGTGGATGATTCATCGACGGAGGAAATAGTATCGTGGAGTTCCAACAACAACACCTTCATCGTTTGGAACCCTGCTGAATTTTCTCGCCTTCTTCTTCCCACTTTTTTCAAACACAACAACTTCTCCAGCTTCATCCGTCAGCTTAACACCTATGGATTTAGAAAAGTACACCCTGAGCGATGGGAGTTTGCTAATGAAGATTTTGTGAAAGATCAAAAGCATCTTCTAAAGAATATTCACCGCAGGAAACCTATCCACAGTCACTCACTCACACAACCCGTCGTGGATTCGGAAAGGTCCGCATTTGAGGAACAGATAGAGAAACTTTCACGCGACAAGGCCACCATTCAATCCAATATTTTCCGCTTCAAACAACACCACTCCGCTGCCAAGACTTATCTTCAAGATCTGCTTCTGCGATTGGATGGCATGGAGGAGAGGCAGCAAAATTTGCTCACCTTCTTTCAAAACGCTCTTCACAATCCTACTCTTCTTCAACAGATCACTCGCAAAATCGAGTCCATGGATTTGCTGGCTTATAACAAGAAAAGGCGATTACCTCCTCGGCTTGATGATCGTGACCACGTTGCTGGAAATACCTTTGTTGAATGTTTTGGAACTGAATTTGGAAATGTTTCTCATCAAGAATTCTCCGATAAACTCACACTGGAACTGTCACCTGCTGTTTCAGAAATGAACTTGGTGGTGTCGTGTAGTACACAGAGTTCAAACGAAGATGGAGAAAGCCCACATAATATGATGCTACCTGAGATAGCAGAGATTGCACAGACCGGAGAGTCTCTTAATTTTGAGATGCATTCCTGTTTATCACGAACCGCCACAGCTACCGAGAGCCCCAAATTGGACTCAAATAATGAAGATGGTGACAGTTATATATCCTGTCTTTTGAATCTATCTCTGGCATCTTCTCCACTACTAGCCAAGAGAAACACATTCCCAGATAGATCCCCATCCCTAATAGACTGTCCAGAATTTGGCAAATTGGATGGATCAAAGTTTTGTGCCGATGATATTAAAGAATATGACGCTGGAGCCTCTTCAAGCAGAAGTCTAAACGAGGTCAGTAATTTAGCCGAGGCTACCCCAACTGCTCCAGTTAGAGTAAATGATGTGTTCTGGGAACAGTTCCTTACTGAAAGACCAGGTTGTTCTGACACCGAAGGCTCAATGTCCACCCACAAAGTAAATGCTTATGTTGCTGATCAAGATGAAGGGCGATCCGTTCATGGAATCTCTGGAAATGTTATGGACATGGATCAGCTCACACTCTGA 1380 0.4442 MEGTGSGSGSSSPAAPAGPAPFLLKTYEMVDDSSTEEIVSWSSNNNTFIVWNPAEFSRLLLPTFFKHNNFSSFIRQLNTYGFRKVHPERWEFANEDFVKDQKHLLKNIHRRKPIHSHSLTQPVVDSERSAFEEQIEKLSRDKATIQSNIFRFKQHHSAAKTYLQDLLLRLDGMEERQQNLLTFFQNALHNPTLLQQITRKIESMDLLAYNKKRRLPPRLDDRDHVAGNTFVECFGTEFGNVSHQEFSDKLTLELSPAVSEMNLVVSCSTQSSNEDGESPHNMMLPEIAEIAQTGESLNFEMHSCLSRTATATESPKLDSNNEDGDSYISCLLNLSLASSPLLAKRNTFPDRSPSLIDCPEFGKLDGSKFCADDIKEYDAGASSSRSLNEVSNLAEATPTAPVRVNDVFWEQFLTERPGCSDTEGSMSTHKVNAYVADQDEGRSVHGISGNVMDMDQLTL 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6732g00013 459 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 13 269 IPR027725 -
Vium6732g00013 459 ProSitePatterns HSF-type DNA-binding domain signature. 61 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium6732g00013 459 Pfam HSF-type DNA-binding 22 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium6732g00013 459 SMART hsfneu3 18 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium6732g00013 459 FunFam Heat shock transcription factor 1 15 112 - -
Vium6732g00013 459 Coils Coil 128 148 - -
Vium6732g00013 459 PRINTS Heat shock factor (HSF) domain signature 22 45 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium6732g00013 459 PRINTS Heat shock factor (HSF) domain signature 73 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium6732g00013 459 PRINTS Heat shock factor (HSF) domain signature 60 72 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium6732g00013 459 SUPERFAMILY "Winged helix" DNA-binding domain 18 111 IPR036390 -
Vium6732g00013 459 Gene3D - 16 112 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6732g00013 Vium-Chr6732 45254 47515 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6732g00013 22 459 HSF AT4G13980 47.548 2.06e-128 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vium6732g00013 HSF_DNA-bind 1.3e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6732g00013 K09419 - gmx:100816484 510.375