Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6731g00042 ATGAACGGGAAAGCCTCCATCTCTAAGGAGCTCAATGCCAAACACGCCAAGATCTTGGAAGGACTTCTTAAGCTGCCCGAGAACAGGGAATGTGCAGACTGTCGGAACAGGGCACCACGATGGGCTAGTGTTAACCTAGGGATTTTCATTTGCATGCAATGTTCAGGAATTCACCGAAGCCTTGGAGTTCATATATCGAAGGTGCGGTCCACAACTTTAGATACGTGGTTACCAGACCAAGTTTCTTTCATGCAATTTATGGGTAATGTAAAGTCAAATAAGCACTGGGAAGCAGAAATGCCACCAAATTTTGATAGAAGTAAATTGGCAATGGAGAAGTTTATCCGTATGAAGTATGTAGAGAAAATATGGGCTTCAAAAGATGAAGAGCAATCAAAATCAAATGGAGGCATTCTGAAGAACAACAGGAGACTCTCTCTTGAAGAAAGCATTCTTGCAAACCACGTCGCACAAATTCTACCCCCAATAACAAGACCACGAGGGGGTTTTATAGACACGCAAAAGAAGAATTCTCCTCCATTTAAAAGGTCATCCTCTTCTGTTGATTTTGACAAGTCCACAAAGAGCATCGCTTCTGGGAACATTTTCAACTTGCTTTGCATCTATGACGATAACAAAAAATTTTCAACAGTGCCACCTTCAACTTGGGCAACATTTGATTGA 684 0.4181 MNGKASISKELNAKHAKILEGLLKLPENRECADCRNRAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPDQVSFMQFMGNVKSNKHWEAEMPPNFDRSKLAMEKFIRMKYVEKIWASKDEEQSKSNGGILKNNRRLSLEESILANHVAQILPPITRPRGGFIDTQKKNSPPFKRSSSSVDFDKSTKSIASGNIFNLLCIYDDNKKFSTVPPSTWATFD 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6731g00042 227 Gene3D Arf GTPase activating protein 2 134 IPR038508 -
Vium6731g00042 227 SMART arf_gap_3 16 133 IPR001164 GO:0005096
Vium6731g00042 227 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Vium6731g00042 227 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Vium6731g00042 227 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Vium6731g00042 227 Pfam Putative GTPase activating protein for Arf 17 127 IPR001164 GO:0005096
Vium6731g00042 227 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 132 IPR001164 GO:0005096
Vium6731g00042 227 FunFam stromal membrane-associated protein 1 isoform X1 1 130 - -
Vium6731g00042 227 CDD ArfGap 19 119 - -
Vium6731g00042 227 SUPERFAMILY ArfGap/RecO-like zinc finger 16 126 IPR037278 -
Vium6731g00042 227 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 192 IPR044520 GO:0005096
Vium6731g00042 227 MobiDBLite consensus disorder prediction 167 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6731g00042 Vium-Chr6731 201180 204846 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6731g00042 19 119 C2H2 Transcription Factor Family AT3G07940 48.598 4.99e-27 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6731g00042 K12486 - gmx:100803735 393.66