Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6731g00040 ATGAGGTGGTGCAGAGAGGTGTTCTCTGTGCGTGGGTCTGGGTCGGGTGCTCATGCCATTGCGCTGTCACTCGCACCTATAGTTACTGCTTCCTTTTGCAGCAAAAGTCTTGTGTTGCCATTCCAAAATTTTCCTTTCAAATTCAAACTCACTGACTCATCTTCTCTTGCTCTCACCCATCGTAAGCAGCTCTTACCCGCTGCACTGTCACTAACACAGCCCTCTACTGAAAGGGAGGACGACTTTGATTTTGTGGTCGTCAATTTCTACCATTTTGTGTTCATCCAAGACCCACAAGCCGAAGTCTCCAAACACCGTTCTTTCTTGGAATTGCAGGACCTCGACATCAATGGAAGAGTCTATGTGAATGAACAAGGGATTAATGCCCAGATATCTCCATCAGAAAATGGACATACCTTTCCAGCATTGAAGTTGCGTTATAAGCCTTCATTGGTACAGTTTGAAGGTGGTATGTCACATCTTCCGTTGCTTGATCCTTCAATGCGTGCAATAGCTTTATCACCAGCAGAATGGAAAGAAAGATTGGAAGCAGTCAATAAAACTGATCTTAGAGCAAAAGATTATCATGACAGAGATTTCATTCTATTGGATGTCAGAAATGGTTATGAGTGGGATATTGGACATTTTCGTGGGACTCAACGACCTAGTGTGGACTGCTTTAGGAACACTTCTTTTGGTCTTTCTCAGGAAGAGATCACTGCTTCAGATCCTTTATCAAACGTGGATAAAGAAAAGGCAAACATATTGATGTATTGCACTGGAGGGATTCGATGTGATGTATATTCTACAATACTAAGGAGGCAGGGATTTCAGAATCTATATACCCTGAAGGGAGGTGTTTCTCACTATTTAAAGAACGAAGGGGCTGCTGAATGGGTGGGAAATTTATTTGTATTTGACTCCCGTTTGTCTCTCCCTCCTTCTGTCTACTATACTGGGGCCACAGCCGAAGCAGAATTAACTCCAGTTTCTGGAGATGATAAGTTTGCAAAATGCCATGTATGTAATTTGGAAGTGAGTGAATTGAGACATAGGAACTGCGCAAATCTTGATTGTAATTTACTTTTTCTATGCTGCACAAAATGTGTAAAGGATCTAAGAGGTTGTTGTTGTTTGACGTGCACTACTGCTCATCGGCTTAGACCTGTTTTAAATGGAATGCAGAGATACAAAAAATGGCACAACTATCGGGATATGGATTTGCCAGAGCAATGA 1236 0.4215 MRWCREVFSVRGSGSGAHAIALSLAPIVTASFCSKSLVLPFQNFPFKFKLTDSSSLALTHRKQLLPAALSLTQPSTEREDDFDFVVVNFYHFVFIQDPQAEVSKHRSFLELQDLDINGRVYVNEQGINAQISPSENGHTFPALKLRYKPSLVQFEGGMSHLPLLDPSMRAIALSPAEWKERLEAVNKTDLRAKDYHDRDFILLDVRNGYEWDIGHFRGTQRPSVDCFRNTSFGLSQEEITASDPLSNVDKEKANILMYCTGGIRCDVYSTILRRQGFQNLYTLKGGVSHYLKNEGAAEWVGNLFVFDSRLSLPPSVYYTGATAEAELTPVSGDDKFAKCHVCNLEVSELRHRNCANLDCNLLFLCCTKCVKDLRGCCCLTCTTAHRLRPVLNGMQRYKKWHNYRDMDLPEQ 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6731g00040 411 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 77 134 IPR020936 -
Vium6731g00040 411 Gene3D - 72 139 - -
Vium6731g00040 411 Gene3D - 165 323 IPR036873 -
Vium6731g00040 411 Pfam Rhodanase C-terminal 301 382 IPR022111 -
Vium6731g00040 411 Pfam Rhodanese-like domain 194 291 IPR001763 -
Vium6731g00040 411 CDD RHOD_YceA 173 292 - -
Vium6731g00040 411 ProSiteProfiles Rhodanese domain profile. 196 299 IPR001763 -
Vium6731g00040 411 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 162 310 IPR036873 -
Vium6731g00040 411 Pfam UPF0176 acylphosphatase like domain 85 136 IPR040503 -
Vium6731g00040 411 SMART rhod_4 174 296 IPR001763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6731g00040 Vium-Chr6731 194253 199859 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6731g00040 83 407 Sulfurtransferasese or Rhodanese AT1G17850 60.773 2.46e-157 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6731g00040 - - gmx:100814358 689.878