Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6731g00035 ATGGAGTATGGGAGTGGAGGCGGTGGCTCTCAGTCTGCAGGGGAACACGATGCTTCCGATTCCCAGGAGAAGCGAAAGCGCTATCATCGTCATACTTCCACCCAGATTCAGAGGCTTGAGTCAATGTTCAGAGAGTGTCCCCATCCAGATGAGAAGCAAAGGTTGCAGTTAAGCAGAGAGTTAGGCTTGGCCCCTCGACAGATCAAGTTCTGGTTTCAGAACAGGAGGACCCAGATGAAGGCCCAGCACGAGAGAGCTGACAACTGTACTCTTCGGGCTGACAATGACAAGATACGCTGCGAGAACATAGCTATCAGAGAGGCTTTGAAAAATGTTATCTGCCCCTCTTGTGGTGGCCCTCCCCTCAATGATGATTCCTATTTTGACGACCAAAAGTTGCGATTAGAGAATGCTCACCTCAAAGAAGAGCTTGATAGAGTATCCAGCATTGCTGCCAAGTACATTGGAAGACCAATTTCCCAGCTCCCTCCTGTTCAGCCTATTCATTTATCGTCTCTCGACTTGTCAATGTCGTGTTTTGGAAACCAAGCGATGGTTGATCATGTTCTTGCACCTTCTCCTTCCCTTAATCTCGATCTTCTTTCTGCGGGGACTTCCTCTTCTGTGCCAAATTTTCCTTATCAGCCTCCTTACCTTTCGGACATGGACAAGTCCCTCATGTCCGACATTGCTTCCAATGCCATGGAAGAATTACTTCGGCTGGTGCAGACAAATGAACCCTTGTGGCTCAAGTCCAACGTCGATGGGAGATATGTCCTTAATTCTGATTCCTACGATAGAATTTTCCCCAAGCCCAATAGTTGCCCCAAGACTCCTAATCTTCGCCTTGAGGCATCACGAGATTCTGCAGTCGTATTAATGAATAGTTTGGCTTTGGTTGACATGTTTATGGACCCAAACAAGTGGATGGAACTTTTTCCCACTATTGTCTCAGTTGCAACGACTATTCAAGTCATATCTTCTGGGATGATGGGTGGTTCTTTGCAATTGATGTATGCGGAGTTGCAAGTGCTTTCTCCCCTTGTTTCTTCTCGGGAGTTCTACTTCCTTCGCTATTGCCAGCAAATTGAGAAAGGTACATGGGCAGTGGTGGACGTTTCTTACGATTTTCCTCAAGACAGCCACTTTGGTCCGCACTTTCGGTCTCGTCGTCGTCCTTCTGGTTGCTTGATCCAAGACATGCCGGACGGGCATTCCAAGATTACTTGGGTTGAACATGTAGAGATCGAAGACAAAACTCTGCCTCATCGGCTTTACAGAAATCTTATTTATAGTGGGATGGCATTTGGCGCTGAAAGATGGCTTGCAACTCTCCAGAGAATGTGTGAAAGACTTACATATCTGATGATTACATCCGATTCAACCGTGGATAATCCTGGAGGAGTAATTTCATCCGCCGAGGGCAAGAGGAGCATGATGAAACTAGCTCAAAGGATGGTCACGAATTTTTGTGGCAGCATTGGCACTGCAAGTGGCCGGCGATGGACCACAATCTCCGGGTTGAATGAAATATTAATCAGAGTCACAGTCCACAAAAGCTCAAATCCTGGACAACCTAATGGTGTGGTGCTAAGTGCAGCCACTACCATTTGGCTCCCCACCCCTCCACACACTGTCTTCAATTTCTTCAAGGATGAAACAAAAAGACCTCAGTGGGATGTTCTTTCCAACGGTAATGCAGTGCAAGAGGTTGCCCAGATAACCAATGGTCAAAATGCTGGTAACAGCATATCAGTTCTTCGAGCTTTCAACACGAGTCAAAACATGTTAATACTCCAAGAGAGCTGCATAGATTCGTCTGGTTCACTTGTGGTTTATTGCCCGGTTGATCTGCCATCGATCAACATAGCAATGAGTGGTGAAGACACTTCGTGCATTCCATTGCTACCAAATGGGTTTATCATTTTGCCAGATGGGGAGACGGAGCAGGAAGGAGATGGAGCATCAACCAGTTCAAACGCAAACAGGAACAAGGCAAGGTCTGGGGGTTCGCTAGTCACAGTTGCATTTCAGATTCTAGTGAGCTCCTCGCCATCTGCCAAGTTGAATATGGAAGTGACAACTGTTTGTAATCTCATTGGCTCCACTGTCCAGCAAATAAAGGCTTCATTGAGTTGTCCTACCTAG 2148 0.4669 MEYGSGGGGSQSAGEHDASDSQEKRKRYHRHTSTQIQRLESMFRECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNCTLRADNDKIRCENIAIREALKNVICPSCGGPPLNDDSYFDDQKLRLENAHLKEELDRVSSIAAKYIGRPISQLPPVQPIHLSSLDLSMSCFGNQAMVDHVLAPSPSLNLDLLSAGTSSSVPNFPYQPPYLSDMDKSLMSDIASNAMEELLRLVQTNEPLWLKSNVDGRYVLNSDSYDRIFPKPNSCPKTPNLRLEASRDSAVVLMNSLALVDMFMDPNKWMELFPTIVSVATTIQVISSGMMGGSLQLMYAELQVLSPLVSSREFYFLRYCQQIEKGTWAVVDVSYDFPQDSHFGPHFRSRRRPSGCLIQDMPDGHSKITWVEHVEIEDKTLPHRLYRNLIYSGMAFGAERWLATLQRMCERLTYLMITSDSTVDNPGGVISSAEGKRSMMKLAQRMVTNFCGSIGTASGRRWTTISGLNEILIRVTVHKSSNPGQPNGVVLSAATTIWLPTPPHTVFNFFKDETKRPQWDVLSNGNAVQEVAQITNGQNAGNSISVLRAFNTSQNMLILQESCIDSSGSLVVYCPVDLPSINIAMSGEDTSCIPLLPNGFIILPDGETEQEGDGASTSSNANRNKARSGGSLVTVAFQILVSSSPSAKLNMEVTTVCNLIGSTVQQIKASLSCPT 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6731g00035 715 Gene3D - 228 451 IPR023393 -
Vium6731g00035 715 MobiDBLite consensus disorder prediction 646 666 - -
Vium6731g00035 715 FunFam Homeobox-leucine zipper protein HDG1 12 98 - -
Vium6731g00035 715 SUPERFAMILY Bet v1-like 221 452 - -
Vium6731g00035 715 ProSiteProfiles 'Homeobox' domain profile. 22 82 IPR001356 GO:0003677
Vium6731g00035 715 Pfam START domain 230 451 IPR002913 GO:0008289
Vium6731g00035 715 CDD homeodomain 24 83 IPR001356 GO:0003677
Vium6731g00035 715 Pfam Homeodomain 25 80 IPR001356 GO:0003677
Vium6731g00035 715 ProSitePatterns 'Homeobox' domain signature. 57 80 IPR017970 GO:0000981|GO:0006355
Vium6731g00035 715 SUPERFAMILY Bet v1-like 474 695 - -
Vium6731g00035 715 MobiDBLite consensus disorder prediction 1 33 - -
Vium6731g00035 715 CDD START_ArGLABRA2_like 224 450 - -
Vium6731g00035 715 SMART START_1 229 451 IPR002913 GO:0008289
Vium6731g00035 715 Gene3D - 11 95 - -
Vium6731g00035 715 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 23 711 IPR042160 -
Vium6731g00035 715 MobiDBLite consensus disorder prediction 651 666 - -
Vium6731g00035 715 FunFam Homeobox-leucine zipper protein GLABRA 2 229 450 - -
Vium6731g00035 715 SUPERFAMILY Homeodomain-like 8 82 IPR009057 -
Vium6731g00035 715 ProSiteProfiles START domain profile. 220 454 IPR002913 GO:0008289
Vium6731g00035 715 SMART HOX_1 23 86 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6731g00035 Vium-Chr6731 175367 179045 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6731g00035 20 715 Homeobox Transcription Factor Family AT1G73360 61.810 0.0 853
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium6731g00035 START 1.6e-47 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6731g00035 K09338 - gmx:100796042 1231.08