Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6731g00030 ATGGCGGACTCTAACACAAGCTCAGTTGATGTGATTTTGGAGTTTCTTCGGAGGAACCGATTCACGAGAGCCGAGGCAGCTCTCCGTAGTGAGATAAATAATCGCCCTGACTTGAATGGCTTCCTTCAGAAGCTCACATTGGAAGAAAAGGCCTCACGTGATGTGCCTCAAAGTAATAAGGGGAAGCCTATGATTGAGTTTCAAGAGGTGGACACTCTTGAAGTTTCTAAAGAACTGATCGTCACGGAAATCGAGTGTGGGAATGGTCGAAATGCCGCTGAAAGCAAATGGAAAACTGCTGCTCCCACTTTGGTGGAACGGAGTAAATCGGATGAAGCGGTTCGAACTAGTGATAAGAACTTCATTTTCTCCAATACTTCAGAGGGTGGGATGCTTGATTTATACTCTTGGAAGTTCAACCCTGGGAAAGCTCCTGTGGAGCCTTACCAAAACGATGCTGGTAGTAGGGCTAATACTATTTTGAGCTTGAATGCCACAGTATCTGAACGATCAAAACGTCAAACTAATGAAGCTGTGGATCTAAGTGTTGCCAATACCAGTTCAATGTCTGGGGAGGAAAATGCTGCTCTTGCTGAAAAAAAATCTCTGTGGTCTGGAAGTAGTAGTAAAACCTCCGTGGATCTTAAGTACGACCTTGCGCAAAGCAAAGAACCTATGGAGCTTGATCGGCAACTTAAATTCAATAGTTCTTCTCTTAAAGGGAACTTTCCAGATAATCCCTGGTCAAAAATGGATGAGAACGGGAATTCGTCTTCAGATTCCTGCAAAAATTGTGTCAAGACGGTTTTCCCCCTCTCGAAAGGGGATGTGTCTTCAAACTTCGATGGTGCCACTTATTCTGACAAAAAAGAGGAGAAAAAAAGGGTAGAAATTAGTGAGGCCAGAACATCCATAAAAGAGCAGGTGGGTGAATCAGGGAGGTCTATTTACTTGGCCAAGACACCTGTCAGTTCTGAACAAAAGTTGATTGGCAGCTTAAGATTTCCTCTTCCACCTGAAAATGAGAAGGAAGAATTTCCCAGGCTTCCTCCAGTTAAACTCAAGTCAGATGATAAGCCCTTGGTTGTTAACTGGGAAGAGAAGTTTGAGCGAGATGGGCCAACTTCAAACCCCCCTGGTATGAGGAGGGCTACAGGGGGCAGTTGGTTATCTGTAAGTCAAGGGATAGCAGAGGATACATCTGATCTTGTATCAGGATTTGCTACAGTTGGCGACGGGTTAAGTGAATCTATTGACTATCCAAATGAATATTGGGACTCCGATGAATATGATGACGACGAGGATGTTGGGTACATGAGGCAACCTATTGACGATGAGACCTGGTTTTTGGCACATGAAATTGATTACCCTAGTGACAACGAAAAAGGGGCTGGCCATGAAAGTGTTCCAGACCATCAGGAAAGAGGTCTGGCCAAAGATGAGGATGACGATCAATCTTTTGCTGAGGAAGATTCTTACTTTTCTGGGGAGCGATATCTTCAGGAAAATAATGTTGAGCCAGTCACAGCTACTGATGATTCTATTGGTCTGACAGTTACTGAGTATGGAAGGACCAATGATAATGATTTAATGGCTCAATATGATGGACAATTGATGGATGAAGAAGAATTGAACCTTATGTGTGCAGAACCAGTCTGGCGGGGCTTTGTCCCTCAGACTAATGAACTCATCATGCTAGGAGATGGGAGGGTGTTGAATGATAATGTAAGATCACGGCAAGAGAACATCAAAATGGATGATGATCAGCATGGTTCCGTTAGGTCAATTGGGGTAGGGATTAATAGTGATGTTGCAGATATTGGCAGTGAAGTGCGTGAAAGTTTGGTTGGTGGTAGTAGTGAAGGAGATTTAGAATATTTCCATGGTCGTGATGCTGGGCTTGGTGGCAGGCACCCCCATCGTGATTTGGACAAGAAATCTACTAACAAATCAAATGTAAGTAAGAACAATGACCAGAGTGAGTCAAATAAATATGTCATAGGATGTGACAGAGATACACAGTTCCAGATAAAAACTCATGGTGATGGGAACTTCTCTTTTCCCCTATCTTTGAAGGATGGTGATATAATTCAGGCTTCCACCGATAAGTCCCTGTGGTCAAATAACGACAATGCAGATGAAATTGATGACTGTCTTAGTGCATTTGTGGAAACTGATGACATGCTTGCTTCGTGGAGGCGAAAGAGTAGTGATTCATCACCTGCTAGAAGTTCTAGGGGTGATAATAATGCTAACAATGTAAGATCTGCAAACTCTTCTCCAACAACAATTTCAAATTATGGATATTCTGAAAGAGAGCGTGTGAAGGTGGAGGAGGATGAAAAAACTGGAATTGCTATGGAAGATGACCTAGGAGCAGAGGATGAAGAGGTAGCTGCTGTGCAAGAGCAAGTAAGACAGATAAAGGCACAGGAGGAGGAATTTGAAACTTTCAATCTAAAGATTGTGCACAGGAAAAACAGAACTGGTTTTGAGGAGGACAAGAATTTCCATGTTGTTTTAAATTCTGTAATAGCTGGAAGGTATCATGTTACGGAGTATCTGGGATCTGCTGCATTTAGCAAAGCCATACAAGCTCATGACCTACATACAGGCATGGATGTTTGTGTTAAAATTATAAAGAACAACAAGGACTTTTTTGACCAAAGTCTTGATGAGATCAAGCTTCTCAAGTATGTCAATAAGCATGATCCTGGAGACAAGTATCACATTCTTCGATTATATGATTATTTCTATTATCGAGAACATTTGTTAATAGTATGTGAACTACTTAAAGCAAACTTGTACGAGTTTCATAAATTTAATAGAGAATCAGGTGGTGAAGTGTACTTTACAATGCCAAGATTGCAGTCAATTACCATTCAGTGTTTGGAAGCACTTCAGTTTCTGCATAGCCTTGGACTAATACACTGTGACTTGAAACCAGAGAATATTTTGGTTAAGAGCTATAGTAGATGTGAGGTGAAGGTCATTGATCTTGGAAGTAGTTGTTTTGAGACGGATCACCTTTGCTCTTATGTTCAGTCAAGGTCCTATCGTGCTCCTGAGGTTATTTTGGGACTTCCATATGATAAGAAGATTGATATCTGGTCTCTTGGCTGCATCTTGGCAGAACTTTGTACTGGGAATGTCCTCTTCCAAAATGATTCGCCTGCAACATTACTTGCACGGGTGATTGGGATTATGGGTCCAATTGATCAAGGTATGCTTGCAAAAGGACGGGACACCTATAAGTACTTCACCAAAAATCATATGCTTTATGAAAGGAATCAGGAAACCAACAGGTTAGAATACTTGATTCCAAAAAAGACATCCTTGAGGCATAGATTGCCAATGGGAGACCAAGGCTTCATTGACTTTGTGGCTCACTTGCTTGAAGTCAACCCTAAGGAGCGACCCTCTGCATCTGAAGCCCTGAAGCATCCATGGTTATCGTACCCTTATGAACCCATTTCATCTTGA 3483 0.4203 MADSNTSSVDVILEFLRRNRFTRAEAALRSEINNRPDLNGFLQKLTLEEKASRDVPQSNKGKPMIEFQEVDTLEVSKELIVTEIECGNGRNAAESKWKTAAPTLVERSKSDEAVRTSDKNFIFSNTSEGGMLDLYSWKFNPGKAPVEPYQNDAGSRANTILSLNATVSERSKRQTNEAVDLSVANTSSMSGEENAALAEKKSLWSGSSSKTSVDLKYDLAQSKEPMELDRQLKFNSSSLKGNFPDNPWSKMDENGNSSSDSCKNCVKTVFPLSKGDVSSNFDGATYSDKKEEKKRVEISEARTSIKEQVGESGRSIYLAKTPVSSEQKLIGSLRFPLPPENEKEEFPRLPPVKLKSDDKPLVVNWEEKFERDGPTSNPPGMRRATGGSWLSVSQGIAEDTSDLVSGFATVGDGLSESIDYPNEYWDSDEYDDDEDVGYMRQPIDDETWFLAHEIDYPSDNEKGAGHESVPDHQERGLAKDEDDDQSFAEEDSYFSGERYLQENNVEPVTATDDSIGLTVTEYGRTNDNDLMAQYDGQLMDEEELNLMCAEPVWRGFVPQTNELIMLGDGRVLNDNVRSRQENIKMDDDQHGSVRSIGVGINSDVADIGSEVRESLVGGSSEGDLEYFHGRDAGLGGRHPHRDLDKKSTNKSNVSKNNDQSESNKYVIGCDRDTQFQIKTHGDGNFSFPLSLKDGDIIQASTDKSLWSNNDNADEIDDCLSAFVETDDMLASWRRKSSDSSPARSSRGDNNANNVRSANSSPTTISNYGYSERERVKVEEDEKTGIAMEDDLGAEDEEVAAVQEQVRQIKAQEEEFETFNLKIVHRKNRTGFEEDKNFHVVLNSVIAGRYHVTEYLGSAAFSKAIQAHDLHTGMDVCVKIIKNNKDFFDQSLDEIKLLKYVNKHDPGDKYHILRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQFLHSLGLIHCDLKPENILVKSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLPYDKKIDIWSLGCILAELCTGNVLFQNDSPATLLARVIGIMGPIDQGMLAKGRDTYKYFTKNHMLYERNQETNRLEYLIPKKTSLRHRLPMGDQGFIDFVAHLLEVNPKERPSASEALKHPWLSYPYEPISS 1160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6731g00030 1160 FunFam Putative serine/threonine-protein kinase dyrk2 843 930 - -
Vium6731g00030 1160 SUPERFAMILY Protein kinase-like (PK-like) 838 1153 IPR011009 -
Vium6731g00030 1160 MobiDBLite consensus disorder prediction 368 393 - -
Vium6731g00030 1160 MobiDBLite consensus disorder prediction 734 769 - -
Vium6731g00030 1160 Pfam Protein kinase domain 849 1151 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6731g00030 1160 ProSiteProfiles Protein kinase domain profile. 849 1151 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6731g00030 1160 ProSitePatterns Serine/Threonine protein kinases active-site signature. 975 987 IPR008271 GO:0004672|GO:0006468
Vium6731g00030 1160 FunFam Serine/threonine-protein kinase ppk15 928 1152 - -
Vium6731g00030 1160 Gene3D Transferase(Phosphotransferase) domain 1 903 1151 - -
Vium6731g00030 1160 SMART serkin_6 849 1151 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6731g00030 1160 MobiDBLite consensus disorder prediction 732 777 - -
Vium6731g00030 1160 PANTHER DUAL SPECIFICITY PROTEIN KINASE 388 1151 - -
Vium6731g00030 1160 MobiDBLite consensus disorder prediction 235 260 - -
Vium6731g00030 1160 MobiDBLite consensus disorder prediction 627 651 - -
Vium6731g00030 1160 CDD PKc_DYRK_like 849 1151 - -
Vium6731g00030 1160 MobiDBLite consensus disorder prediction 456 487 - -
Vium6731g00030 1160 MobiDBLite consensus disorder prediction 456 482 - -
Vium6731g00030 1160 Coils Coil 791 821 - -
Vium6731g00030 1160 MobiDBLite consensus disorder prediction 627 664 - -
Vium6731g00030 1160 Gene3D Phosphorylase Kinase; domain 1 843 930 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6731g00030 Vium-Chr6731 145428 157223 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6731g00030 848 1146 MAP Kinase Gene Family AT5G19010 31.034 1.07e-29 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Vium6731g00030 Pkinase 2.7e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6731g00030 - - gmx:100797095 1771.13