Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6731g00028 ATGCACCGGCGCCGCCACAAGGTGCCCTGGAAGCTCTTGAAGAGGGAGACGCCACTGGTGAAGAAGCGAGTCTTCGTTTGCCCGGAGCCTACTTGCTTGCACCATGACCCTTGCCACGCTCTGGGTGATCTTGTCGGCATAAAGAAGCACTTCAGAAGAAAACACAGCAGTCACAAGCAATGGGTCTGCGAGAGATGCTCCAAAGGCTACGCAGTGCAGTCTGATTACAAAGCTCATCTTAAAACGTGTGGCACCCGAGGCCACTCTTGCGATTGTGGCCGCGTTTTCTCAAGGGTGGAGAGCTTTATTGAACACCAAGACGCGTGCAACGTGGGGCGGTTGCGGTCAGAAACGCAGGCAGTGCAAGCTGCTGCATGCTTGTCTCGAACAGCTTCAAGCCCTTCTAGCGAAAACAATTTCAGCACACGTGCTCCTTTGCAAATCGGTGTAATAATTCCGAAGCTCCCGGAAACAGTAGTAGAACCGGCCTTATTCAGCAACACTACCACGACACAAACCAACAACGACAACAAAGTGAACAAGCTCCAGCCCAACCTTGAGCTTCAGCTCTCTACAGCCCCTCCTATTGAAATGATCGGGGCTGCTTCAGGCACTGGCAATAAGAGAGAGGGAAACCCCTCTGCACAGTTGCAGTTATCGATAGGGTCATTGGAAAAAGGGTGCATGAGGGAGAAGTCATTGGGAGGAAGGTTTGAAGATGAGGCACGTGAGCAGCTGAGGATAGCGGTGGCGGAAAAAGCGTATGCGGAAGAGGCAAGGAAGCAAGCCAAGAGGCAGATGGAGCAGGCGGAACTGGAGTTCACTAATGCCAAAAGGATAAGACAACAAGCGCTAGCGGAACTGGACAAAGCCTGCGCCTTGAAGGACCACGCAATCAAACAGATCCATTCAACTATGCTTCAGATCACCTGCCTTGCTTGCAAGCACCATTTCCAATCGCCAACCGTAACGTGTACTGCTCCTTCCGACCAGACTTCTTTCGTCTTCAGTTACATAACAACAGACGCTGCCCAAGTTGGAAAGCATCGTGTCAAACCCATTAACTCATAG 1071 0.5163 MHRRRHKVPWKLLKRETPLVKKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSSHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNVGRLRSETQAVQAAACLSRTASSPSSENNFSTRAPLQIGVIIPKLPETVVEPALFSNTTTTQTNNDNKVNKLQPNLELQLSTAPPIEMIGAASGTGNKREGNPSAQLQLSIGSLEKGCMREKSLGGRFEDEAREQLRIAVAEKAYAEEARKQAKRQMEQAELEFTNAKRIRQQALAELDKACALKDHAIKQIHSTMLQITCLACKHHFQSPTVTCTAPSDQTSFVFSYITTDAAQVGKHRVKPINS 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6731g00028 356 PANTHER OS03G0310200 PROTEIN 13 338 - -
Vium6731g00028 356 Coils Coil 253 287 - -
Vium6731g00028 356 Gene3D Classic Zinc Finger 46 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6731g00028 Vium-Chr6731 130340 133007 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6731g00028 1 341 C2H2 Transcription Factor Family AT2G01940 51.136 2.15e-103 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium6731g00028 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6731g00028 K25871 - gmx:100798167 464.922