Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6731g00027 ATGGCCTCCCTTGTAAGGATTGACACGTTGCTCAAAACCTCATCTCCCTCCTCTCTTCCCACTTCCCAGCCCTTTTCCTTTGCCCAGAATGCTACCACTCCCACTAATAAAAGAAAGAGAAGGCCTGCAGGAACACCAGATCCAGATGCAGAAGTCGTGTCCCTCTCACCCAAGACCTTGCTTGAATCAGATCGTTTCGTCTGTGAGATCTGCAACCAGGGATTCCAGCGGGACCAGAACCTTCAGATGCACCGGCGCCGCCACAAGGTGCCCTGGAAGCTCTTGAAGAGGGAGACGCCACTGGTGAAGAAGCGAGTCTTCGTTTGCCCGGAGCCTACTTGCTTGCACCATGACCCTTGCCACGCTCTGGGTGATCTTGTCGGCATAAAGAAGCACTTCAGAAGAAAACACAGCAGTCACAAGCAATGGGTCTGCGAGAGATGCTCCAAAGGCTACGCAGTGCAGTCTGATTACAAAGCTCATCTTAAAACGTGTGGCACCCGAGGCCACTCTTGCGATTGTGGCCGCGTTTTCTCAAGGGTGGAGAGCTTTATTGAACACCAAGACGCGTGCAACGTGGGGCGGTTGCGGTCAGAAACGCAGGCAGTGCAAGCTGCTGCATGCTTGTCTCGAACAGCTTCAAGCCCTTCTAGCGAAAACAATTTCAGCACACGTGCTCCTTTGCAAATCGGTGTAATAATTCCGAAGCTCCCGGAAACAGTAGTAGAACCGGCCTTATTCAGCAACACTACCACGACACAAACCAACAACGACAACAAAGTGAACAAGCTCCAGCCCAACCTTGAGCTTCAGCTCTCTACAGCCCCTCCTATTGAAATGATCGGGGCTGCTTCAGGCACTGGCAATAAGAGAGAGGGAAACCCCTCTGCACAGTTGCAGTTATCGATAGGGTCATTGGAAAAAGGGTGCATGAGGGAGAAGTCATTGGGAGGAAGGTTTGAAGATGAGGCACGTGAGCAGCTGAGGATAGCGGTGGCGGAAAAAGCGTATGCGGAAGAGGCAAGGAAGCAAGCCAAGAGGCAGATGGAGCAGGCGGAACTGGAGTTCACTAATGCCAAAAGGATAAGACAACAAGCGCTAGCGGAACTGGACAAAGCCTGCGCCTTGAAGGACCACGCAATCAAACAGATCCATTCAACTATGCTTCAGATCACCTGCCTTGCTTGCAAGCACCATTTCCAATCGCCAACCGTAACGTGTACTGCTCCTTCCGACCAGACTTCTTTCGTCTTCAGTTACATAACAACAGACGCTGCCCAAGTTGGAAAGCATCGTGTCAAACCCATTAACTCATAG 1317 0.5156 MASLVRIDTLLKTSSPSSLPTSQPFSFAQNATTPTNKRKRRPAGTPDPDAEVVSLSPKTLLESDRFVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPLVKKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSSHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNVGRLRSETQAVQAAACLSRTASSPSSENNFSTRAPLQIGVIIPKLPETVVEPALFSNTTTTQTNNDNKVNKLQPNLELQLSTAPPIEMIGAASGTGNKREGNPSAQLQLSIGSLEKGCMREKSLGGRFEDEAREQLRIAVAEKAYAEEARKQAKRQMEQAELEFTNAKRIRQQALAELDKACALKDHAIKQIHSTMLQITCLACKHHFQSPTVTCTAPSDQTSFVFSYITTDAAQVGKHRVKPINS 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6731g00027 438 FunFam protein indeterminate-domain 12-like 45 113 - -
Vium6731g00027 438 Coils Coil 335 369 - -
Vium6731g00027 438 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 26 384 IPR031140 -
Vium6731g00027 438 SMART c2h2final6 66 88 IPR013087 -
Vium6731g00027 438 SMART c2h2final6 107 137 IPR013087 -
Vium6731g00027 438 SMART c2h2final6 143 170 IPR013087 -
Vium6731g00027 438 Gene3D Classic Zinc Finger 54 139 - -
Vium6731g00027 438 MobiDBLite consensus disorder prediction 13 39 - -
Vium6731g00027 438 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Vium6731g00027 438 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Vium6731g00027 438 SUPERFAMILY beta-beta-alpha zinc fingers 66 88 IPR036236 -
Vium6731g00027 438 MobiDBLite consensus disorder prediction 13 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6731g00027 Vium-Chr6731 130340 133008 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6731g00027 33 423 C2H2 Transcription Factor Family AT2G01940 55.970 4.82e-141 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium6731g00027 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6731g00027 K25871 - gmx:100798167 567