Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6731g00026 ATGTTGGGTTATATAGTTTATGCACTCTGCGCTTGGAAGCAGAAAGAGAGAGAAATGGAAGGAGGATCTGGAGAGAAGTGGAAGACAGTCTACAGAGAGTGCTTGAGAAACCATGCAGCCAGTCTGGGAAGCTATGCCACTGATGGGTGTGGAGAGTTCACGGTGGACGGCGGGGGGCTGCAATGCGTGGCGTGTGGGTGCCACCGGAATTTTCATCGGAAAGTGAAGTATCCTGTGGGTCCGGAAAGTCCTGAAGCCATGGATTACGGTGGTGAGGGAGGGAGTAAGAAGCGGTTCAGGTCGAAATTCAGCGCAGATCAGAAGGAGAAGATGCTGGCGTTTGCTGAAAAACTTGGTTGGAAGCTTCAGAGGAAGGATCTGGATGATGAGATTGAGAGGTTCTGCAGAAGCATTGGAGTTAGTAGGCAAGTTTTCAAAGTTTGGATGCATAACCATAAGAACTCTTCATCCTCTTCTTCTGCTTCAGCTTCAGCTTCCACAGGAAACATCTCCTCCCTCACCCATTAA 528 0.4924 MLGYIVYALCAWKQKEREMEGGSGEKWKTVYRECLRNHAASLGSYATDGCGEFTVDGGGLQCVACGCHRNFHRKVKYPVGPESPEAMDYGGEGGSKKRFRSKFSADQKEKMLAFAEKLGWKLQRKDLDDEIERFCRSIGVSRQVFKVWMHNHKNSSSSSSASASASTGNISSLTH 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6731g00026 175 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 31 75 IPR006456 -
Vium6731g00026 175 MobiDBLite consensus disorder prediction 153 175 - -
Vium6731g00026 175 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 21 155 - -
Vium6731g00026 175 SUPERFAMILY Homeodomain-like 87 154 IPR009057 -
Vium6731g00026 175 NCBIfam homeobox domain, ZF-HD class 96 154 IPR006455 -
Vium6731g00026 175 Gene3D - 83 160 - -
Vium6731g00026 175 FunFam Zinc-finger homeodomain protein 2 84 158 - -
Vium6731g00026 175 Pfam ZF-HD protein dimerisation region 29 75 IPR006456 -
Vium6731g00026 175 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 31 74 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6731g00026 Vium-Chr6731 118704 119511 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6731g00026 28 155 ZF-HD Transcription Factor Family AT4G24660 43.275 5.69e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vium6731g00026 ZF-HD_dimer 7.9e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6731g00026 - - ccaj:109799743 281.182