Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6731g00017 ATGCAGACAATAATGGATAAATCTCACTCAAGTTTCACCCGTTGTTGCGCCGCTCCCACTCCCACGCGCCGCCACCGATTCCTCATTCATCCTCATAATCGGTGGTATCTGTTGTGGAAGCACTTCATTCTGATATGGGCGATTTACTCTTCATTCTTCATTCTTATGGAGTTCGGTTTCTTCAGAGGCTTACCTAACAACATATTTCTCCTGGACATAGCGGGGCAATTGGTGTTTCTGATGGACATGGTGGTGCAGTTCTTGGTGTGCTATCACGAAGTTCACTCCAACTCACTCTCCTTGGTCCTCGACCACTACAAGATCTTCGTCAGGTACCTCAAGTCTCGCTTCTTCTTCGACCTCCTCTCATGTCTCCCATGGGATTTCATCTACAAGCGCACCAACAACAATGAGCTCCTCCGCTCTCTGCTCTGGATCATACTTGCTCGTGCTTCCCGTGTCACCCAATTCCTCGACACCCTCGAGAAGGATACAAGGATCAATTACTTGTTCACCAGAATCCTCAAACTCTTCGTCGTTGAACTTTACTGCACTCACTCCGCTGCTTGCATTTTTTACTATCTTGCCACCACTCTGCCCTCTTCCCAGGAGGGTTACACCTGGATCGGTAGCTTGAAGATGGGAGACTATGCGTATTCTGACTTCCGACACATCGATCTCTGGAAGCGTTATGTCACCTCCCTCTACTTTGCCGTTGTTACCATGGCCACCGTTGGCTACGGAGAAATCCACGCAGTCAACGTGCGTGAAATGATATTCGTCATGGTTTATGTCTCCTTTGACATGATTCTTGGCGCTTACCTCCTCGGCAACATGACTGCGTTGATCGTGAAAGGGTCTAAGACCGAGAGATTCAGAGATAAAATGTCTGATATTAGTAAGTTCTTCGATAAGAACAAACTGGACAGCCAGATATGTCACCAGATTAAAGATCACTTGAGGTTAAAGTATGATCGAAGTTATAACGGATCTTTTATTCTTCAGGAGATACCAACCACCATTCGCAAGAAGATTTCAATAAGCATGTACGAAAAGTTCATTCAGAAAGTTTCTCTTTTCAAGGGATGCTCTTCAGGGTTTATAAAGCAGATCGCAACCAAAGTGGAGGAAGAGTTTTTCCTCCCAGGAGAATTAGTTATGGAGGAAGGAGATGTCGCAGATAAACTCTACTTTGTATATCATGGTGAGATGCGTGAGATGAGGAGGGAAGAGGGTGATACAGAAGAAGAGACGATCACATTGCAGACCTATAGTTCTTTCGGCCATTTTTCTTTTTTTTGCAATATACCTCAAAGTTCGACGGTTGAAGCTCATGAATTTTGCAAGGTTTTGCGACTTGATAAGAAATCCTTTACTGAAATACTGAAGATATACTTTTTAGATGGTCGTGTTGTGTTGAACAACCTCCGGGAGGTAAAAGACTTAAATTTCCAGCGTAAGCTTTTGTTATCAGACTTCAACCTCACTATCGGAAGCATGGAAATAGAGTTGGCTACAAGGCTCAACTGTGCTGCCCATGATGGTCATCTTGATCTTGTCAAACGTTTGATTGGATTTGGGGCAGATCCCAACAAAACTGATTATGACGGTAGAACTCCCTTGCATATCTCTGCATCAAAAGGATATGTGGATATTTCTTCTTATCTTGTTGAAGAAGGAGTATGCATCGATACAGCAGATAAATTTGGCACCACTCCCTTGCTTGAAGCCCTCAAGAATGGACATGAAGATGTGGCATCTGTACTTGTTAACGCGGGAGCTATCCTTGCTATTGATGACGTTGGCAATTTTCTCTGCATGACAGTTGCAAGGAAGGAGTTTGACATTTTGAAAAGGGTTCTAGCTTGTGGTATTAATCCAAATGCAAAAAATTATGATCAGCGTACCCCTCTTCACATTGCTGCCTCTGAGGGCTTCTTTACAATGGTTGAGTTACTTCTAGTGGCAGGAGCAAGTGTTTTATCCAAGGACAGATGGGGAAATACACCTCTTCATGAAGCTCATACTGGTGGAAATAGAAATATGATCAAATTGCTTGAAGTTGCTAAAGTTTCTCAGTTGGCTGAATTGTCCGATAATATTCATGAAACTCAAGCAACACCAGTGCTGCAGTCAACAAATGAAATTCCTAAAAAGAGATGTACAGTGTATCCTTTCCACCCATGGGATCACAAAGCGGGTAAAAGAGAGGGAGTGGTCCTATGGGTTCCACAAAGCATTGAAGAACTTATAAAGGAAGCAGGGAAACATTTGGAAACTACGAACAATTCCTACATTTTGTCAGAAGAAGGTGGAAAAGTTCTTTACGTAGACATGATTAACAACGATGAGAAGTTATTTGTAGTAAGTGAAGAAAAAAATGAGGTGAGATGA 2394 0.4294 MQTIMDKSHSSFTRCCAAPTPTRRHRFLIHPHNRWYLLWKHFILIWAIYSSFFILMEFGFFRGLPNNIFLLDIAGQLVFLMDMVVQFLVCYHEVHSNSLSLVLDHYKIFVRYLKSRFFFDLLSCLPWDFIYKRTNNNELLRSLLWIILARASRVTQFLDTLEKDTRINYLFTRILKLFVVELYCTHSAACIFYYLATTLPSSQEGYTWIGSLKMGDYAYSDFRHIDLWKRYVTSLYFAVVTMATVGYGEIHAVNVREMIFVMVYVSFDMILGAYLLGNMTALIVKGSKTERFRDKMSDISKFFDKNKLDSQICHQIKDHLRLKYDRSYNGSFILQEIPTTIRKKISISMYEKFIQKVSLFKGCSSGFIKQIATKVEEEFFLPGELVMEEGDVADKLYFVYHGEMREMRREEGDTEEETITLQTYSSFGHFSFFCNIPQSSTVEAHEFCKVLRLDKKSFTEILKIYFLDGRVVLNNLREVKDLNFQRKLLLSDFNLTIGSMEIELATRLNCAAHDGHLDLVKRLIGFGADPNKTDYDGRTPLHISASKGYVDISSYLVEEGVCIDTADKFGTTPLLEALKNGHEDVASVLVNAGAILAIDDVGNFLCMTVARKEFDILKRVLACGINPNAKNYDQRTPLHIAASEGFFTMVELLLVAGASVLSKDRWGNTPLHEAHTGGNRNMIKLLEVAKVSQLAELSDNIHETQATPVLQSTNEIPKKRCTVYPFHPWDHKAGKREGVVLWVPQSIEELIKEAGKHLETTNNSYILSEEGGKVLYVDMINNDEKLFVVSEEKNEVR 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6731g00017 797 Pfam KHA, dimerisation domain of potassium ion channel 719 788 IPR021789 -
Vium6731g00017 797 Gene3D - 485 597 IPR036770 -
Vium6731g00017 797 SUPERFAMILY Voltage-gated potassium channels 30 284 - -
Vium6731g00017 797 ProSiteProfiles Ankyrin repeat region circular profile. 536 568 - -
Vium6731g00017 797 ProSiteProfiles Ankyrin repeat profile. 633 665 IPR002110 GO:0005515
Vium6731g00017 797 ProSiteProfiles Ankyrin repeat profile. 569 601 IPR002110 GO:0005515
Vium6731g00017 797 CDD CAP_ED 359 473 IPR000595 -
Vium6731g00017 797 ProSiteProfiles Ankyrin repeat region circular profile. 503 534 - -
Vium6731g00017 797 Gene3D - 37 285 - -
Vium6731g00017 797 ProSiteProfiles Ankyrin repeat profile. 536 568 IPR002110 GO:0005515
Vium6731g00017 797 SUPERFAMILY cAMP-binding domain-like 287 477 IPR018490 -
Vium6731g00017 797 PRINTS Ankyrin repeat signature 537 552 IPR002110 GO:0005515
Vium6731g00017 797 PRINTS Ankyrin repeat signature 649 663 IPR002110 GO:0005515
Vium6731g00017 797 Pfam Ankyrin repeats (3 copies) 611 686 IPR002110 GO:0005515
Vium6731g00017 797 Pfam Ankyrin repeats (3 copies) 510 594 IPR002110 GO:0005515
Vium6731g00017 797 PRINTS EAG/ELK/ERG potassium channel family signature 231 248 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium6731g00017 797 PRINTS EAG/ELK/ERG potassium channel family signature 183 193 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium6731g00017 797 PRINTS EAG/ELK/ERG potassium channel family signature 72 82 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium6731g00017 797 PRINTS EAG/ELK/ERG potassium channel family signature 275 284 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium6731g00017 797 Pfam Ion transport protein 38 284 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vium6731g00017 797 SMART cnmp_10 359 477 IPR000595 -
Vium6731g00017 797 Gene3D - 598 716 IPR036770 -
Vium6731g00017 797 SMART ANK_2a 569 598 IPR002110 GO:0005515
Vium6731g00017 797 SMART ANK_2a 503 532 IPR002110 GO:0005515
Vium6731g00017 797 SMART ANK_2a 666 695 IPR002110 GO:0005515
Vium6731g00017 797 SMART ANK_2a 633 662 IPR002110 GO:0005515
Vium6731g00017 797 SMART ANK_2a 536 565 IPR002110 GO:0005515
Vium6731g00017 797 ProSiteProfiles Ankyrin repeat profile. 503 535 IPR002110 GO:0005515
Vium6731g00017 797 ProSiteProfiles Ankyrin repeat region circular profile. 569 594 - -
Vium6731g00017 797 ProSiteProfiles KHA domain profile. 720 797 IPR021789 -
Vium6731g00017 797 SUPERFAMILY Ankyrin repeat 486 686 IPR036770 -
Vium6731g00017 797 Gene3D Jelly Rolls 330 484 IPR014710 -
Vium6731g00017 797 ProSiteProfiles cAMP/cGMP binding motif profile. 359 462 IPR000595 -
Vium6731g00017 797 ProSiteProfiles Ankyrin repeat region circular profile. 633 665 - -
Vium6731g00017 797 FunFam Potassium channel KAT2 347 483 - -
Vium6731g00017 797 PANTHER POTASSIUM CHANNEL AKT1 23 792 IPR045319 GO:0005249|GO:0006813
Vium6731g00017 797 Pfam Cyclic nucleotide-binding domain 379 463 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6731g00017 Vium-Chr6731 84023 88786 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6731g00017 613 686 Ion Channels AT5G37500 31.250 1.56e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6731g00017 K21867 - gmx:100798698 1233.78