Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6731g00014 ATGAGCTCGCAAGAGCGAAGCCAGCGGTCTAGGGTTCCTCGTCAGGAATGGATTCGTCGAGGATCTACCGATCAGAGTCAGAGTCAGATTCAGAATCAGAATCAAAATGGTGCCGCCACTGCCGCCGCCACCGCTGCTGGTTCATCCAATACAACAAATCGCCATAGGAGGAGCGGTCCTATTCCTAGTCCCAATCCCAATTCCAATCCCAATCCCAATCCTAATCCCAATCCCAATCCCAATCCGAAGAATAATGTGCAGAAGAGATTCAATTCGAGGGACTCTAATTTGCCCCAGCTGTTGCAAGAGATTCAGGAGAAGCTCGTGAAAGGTGCGGTCGAATGCATGATTTGCTGTGACATGGTGCGGAGGTCTGCGCCAATTTGGTCTTGCTCCAGTTGCTTCTCCATCTTTCACCTTAATTGTATAAAGAAGTGGGCGCGTGCACCCACTTCTGTGGATGTGTCTGTGGACAAGAATCAGCGGTTTAATTGGCGGTGCCCTGGTTGTCAATCTGTGCAGCTCACATCGTCCAAGGAGATTCGGTATGTTTGCTTCTGTGTGAAGAGGCCTGACCCCCCTTCCGACTTGTATCTCTTGCCACATTCCTGTGGAGAACCATGTGCCAAACCCCTTGAAAGGGAGCTTGGGGGGGATAAGGAGGTTCTTTGTCCTCATGTTTGTGTCTTGCAATGCCATCCCGGTCCTTGCCCTCCTTGCAAAGCATTTGCACCTCCACGTTTGTGTCCTTGTGGGAAGAAAAATGTTACCACCCGTTGTTCTGACCGCCAGTCTGTTCTTACCTGTGGCCAGCGCTGTGAAAAGCTTCTTGAATGTGGGCGGCATCGGTGTGAACAAATCTGTCATCTGGGACCTTGTGATCCTTGTAAGATTCCTGTCAATGCCTCTTGCTTTTGCAGTAAAAGGACGGAGCTCATTCTTTGTGGGGAAATGGCTCTGAAAGGTGAAATCAAAACCGAAGGTGGAGTTTTCTCTTGCGGTTCAACCTGTGGAAAGAAACTTGGTTGCGGTAATCATATTTGTATCGAGACGTGTCATCCCGGCAGCTGTGGGGAGTGTGGATTGTTACCATCCCATATTAAGACATGCTGTTGTGGGAAAACTAGATTGAAGCAGGAACGACAGAGTTGTTTAGACCCTATACCTACCTGTTCACAAGTATGTGGGAAGACCCTTCCTTGCGGGATTCATCATTGTGAAGAGGCATGCCACGCTGGGGATTGTTCTCCTTGTTTGGTTCTAGTCTCCCAGAAGTGTCGATGTGGCTCTACTTCCCGAACTGTGGAGTGCTGTAAGACAAAAGTGGACGCTGTGAAATTTACTTGTGAAAAGCCTTGTGGGCAGAAAAGGAATTGTGGAAGGCATAGATGCAGTGAACGGTGTTGTCCACTTTCTAATCCAAATAATGTTCAAATTGCGGATTGGGATCCACACTTCTGTTCATTACCATGTGGAAAGAAGCTAAGGTGTGGGCAGCATGCATGTGAATCCCTATGCCACAGTGGTCATTGTCCACCTTGTCTTGAAACTATATTTACTGATTTGACATGTGCTTGTGGCAAGACTTCAATCCCTCCTCCATTGCCTTGTGGCACACCTCCTCCCTCGTGTCAGCTTCCATGTTCTGTTCCTCAGCCTTGTTCACATCCAGCGTCTCACAGCTGCCATTTTGGGGATTGCCCTCCTTGTTCAGTGCCTGTAGCAAAAGATTGTATTGGTGGGCATGTAATTCTTCGGAACATACCCTGTGGTTCAAAGGATATTAGATGCAATAAACTATGTGGGAAGACCAGACAGTGCGGTTTACATGCATGTGGTAGAACATGTCACCTCCCACCTTGTGATAATCCATCTACAGTGCCGGGTACCCGTGCCTCTTGTGGGCAAACATGTGGTGCTCCAAGAAGGGACTGCCGCCATACATGTACAGCTCCTTGTCACCCTTCAACTCCATGTCCAGACACGAGATGCGAATTCCCTGTCACAATTACATGTTCTTGTGGCCGAATGACAGCGAATGTTCCTTGTGATGCTGGTGGAAGCTCTGCTAATTATAATGCCGATGCTGTACACGAAGCTTCCATTATCCAAAAGTTGCCTGTGTTGCTTCAACCTGTTGCTGCAAATGGCAAGAAAGTTCCTCTTGGACAAAGAAAACTGATGTGTAATGATGACTGTGCTAAGTTAGAACGTAAACGGGTACTTGCAGATGCCTTTGAGATAACTGCTCCAAATCTGGATTCTCTCCATTTTGGTGACAATCCTGGTACTTCTGAATTGCTTTCTGACATGTTGAGACGTGATCCTAAATGGGTTTTATCTGTTGAGGAGAGATGCAAGGTTTTGGTTCTTGGCAAGAACAGGGGAAATACACAAGGTCAAAAAATCCATATTTTCTCTCCTATGATAAAGGACAAAAGAGATGCAGTGAGGGTCATTGCTGAAAGATGGAAGCTTGCGGTGTATGTAGCTGGTCGTGAGCCAAAGCGTTTTGTAGTTGTTCATGTTACCCCAAANCAAAATTTATTCAAAACAATTGCCTTTTCTTTAACATATGTTTTTGTTATACCAATATAA 2598 0.4673 MSSQERSQRSRVPRQEWIRRGSTDQSQSQIQNQNQNGAATAAATAAGSSNTTNRHRRSGPIPSPNPNSNPNPNPNPNPNPNPKNNVQKRFNSRDSNLPQLLQEIQEKLVKGAVECMICCDMVRRSAPIWSCSSCFSIFHLNCIKKWARAPTSVDVSVDKNQRFNWRCPGCQSVQLTSSKEIRYVCFCVKRPDPPSDLYLLPHSCGEPCAKPLERELGGDKEVLCPHVCVLQCHPGPCPPCKAFAPPRLCPCGKKNVTTRCSDRQSVLTCGQRCEKLLECGRHRCEQICHLGPCDPCKIPVNASCFCSKRTELILCGEMALKGEIKTEGGVFSCGSTCGKKLGCGNHICIETCHPGSCGECGLLPSHIKTCCCGKTRLKQERQSCLDPIPTCSQVCGKTLPCGIHHCEEACHAGDCSPCLVLVSQKCRCGSTSRTVECCKTKVDAVKFTCEKPCGQKRNCGRHRCSERCCPLSNPNNVQIADWDPHFCSLPCGKKLRCGQHACESLCHSGHCPPCLETIFTDLTCACGKTSIPPPLPCGTPPPSCQLPCSVPQPCSHPASHSCHFGDCPPCSVPVAKDCIGGHVILRNIPCGSKDIRCNKLCGKTRQCGLHACGRTCHLPPCDNPSTVPGTRASCGQTCGAPRRDCRHTCTAPCHPSTPCPDTRCEFPVTITCSCGRMTANVPCDAGGSSANYNADAVHEASIIQKLPVLLQPVAANGKKVPLGQRKLMCNDDCAKLERKRVLADAFEITAPNLDSLHFGDNPGTSELLSDMLRRDPKWVLSVEERCKVLVLGKNRGNTQGQKIHIFSPMIKDKRDAVRVIAERWKLAVYVAGREPKRFVVVHVTPXQNLFKTIAFSLTYVFVIPI 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6731g00014 865 SUPERFAMILY RING/U-box 105 174 - -
Vium6731g00014 865 CDD RING-CH-C4HC3_NFX1-like 114 171 - -
Vium6731g00014 865 ProSiteProfiles Zinc finger PHD-type profile. 112 173 IPR019787 -
Vium6731g00014 865 ProSiteProfiles Zinc finger RING-type profile. 115 171 IPR001841 -
Vium6731g00014 865 SMART znfxneu3 343 362 IPR000967 GO:0005634|GO:0008270
Vium6731g00014 865 SMART znfxneu3 279 298 IPR000967 GO:0005634|GO:0008270
Vium6731g00014 865 SMART znfxneu3 645 666 IPR000967 GO:0005634|GO:0008270
Vium6731g00014 865 SMART znfxneu3 459 489 IPR000967 GO:0005634|GO:0008270
Vium6731g00014 865 SMART znfxneu3 554 572 IPR000967 GO:0005634|GO:0008270
Vium6731g00014 865 SMART znfxneu3 224 242 IPR000967 GO:0005634|GO:0008270
Vium6731g00014 865 SMART znfxneu3 401 420 IPR000967 GO:0005634|GO:0008270
Vium6731g00014 865 SMART znfxneu3 607 636 IPR000967 GO:0005634|GO:0008270
Vium6731g00014 865 SMART znfxneu3 497 516 IPR000967 GO:0005634|GO:0008270
Vium6731g00014 865 CDD NF-X1-zinc-finger 391 439 - -
Vium6731g00014 865 CDD NF-X1-zinc-finger 269 317 - -
Vium6731g00014 865 MobiDBLite consensus disorder prediction 1 97 - -
Vium6731g00014 865 CDD NF-X1-zinc-finger 487 530 - -
Vium6731g00014 865 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 13 847 IPR034078 GO:0003700
Vium6731g00014 865 Pfam NF-X1 type zinc finger 459 470 IPR000967 GO:0005634|GO:0008270
Vium6731g00014 865 Pfam NF-X1 type zinc finger 279 297 IPR000967 GO:0005634|GO:0008270
Vium6731g00014 865 Pfam NF-X1 type zinc finger 226 241 IPR000967 GO:0005634|GO:0008270
Vium6731g00014 865 Pfam NF-X1 type zinc finger 607 622 IPR000967 GO:0005634|GO:0008270
Vium6731g00014 865 Pfam NF-X1 type zinc finger 561 571 IPR000967 GO:0005634|GO:0008270
Vium6731g00014 865 Pfam NF-X1 type zinc finger 497 514 IPR000967 GO:0005634|GO:0008270
Vium6731g00014 865 Pfam NF-X1 type zinc finger 401 418 IPR000967 GO:0005634|GO:0008270
Vium6731g00014 865 Pfam NF-X1 type zinc finger 638 663 IPR000967 GO:0005634|GO:0008270
Vium6731g00014 865 Pfam NF-X1 type zinc finger 343 360 IPR000967 GO:0005634|GO:0008270
Vium6731g00014 865 MobiDBLite consensus disorder prediction 63 81 - -
Vium6731g00014 865 MobiDBLite consensus disorder prediction 82 97 - -
Vium6731g00014 865 MobiDBLite consensus disorder prediction 19 62 - -
Vium6731g00014 865 CDD NF-X1-zinc-finger 333 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6731g00014 Vium-Chr6731 63885 66729 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Vium6731g00014 zf-NF-X1 1.3e+02 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6731g00014 K12236 - gmx:106799700 1499.95