Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6731g00013 ATGCTGCCTCACAAGCACACTCTCGTGGTTGTGGCGGCCACGCTGGCGCTCATGCTCGCAGCAGCAGATGCAGATCTGGCAGCCGAGCGAGCCGCATTGCTCGCTCTCCGCTCTGCGGTCGGCGGCAGAACCCTCTTCTGGAACGCCACCAGGGACAGCCCCTGCACCTGGGCCGGTGTCCAATGCGAGCGCGACCACGTCGTCGAGCTCCACCTTCCCGGCGTCGCTCTCTCCGGCCAAATCCCTGTCGGAATATTCGGCAATCTGACACAGTTGCGCACCCTCAGTCTCCGCTTCAACGCGCTGCGGGGTTCCCTGCCTTCAGATCTGGCGAAGTGCGTGAACCTTCGGAACCTGTACATTCAGCGGAACCTGCTGAGCGGTGCTATCCCGTCGTTCTTGTTCGAGTTACCCGACTTGGTTCGCTTGAACATGGGCTTCAACAACTTCTCAGGCCCATTTCCGACCGACTTCAACAGCCTGACCCGGTTGAAGACTCTGTTTGTGGAAAACAACCAGCTCTCTGGCCCAATCCCCAACTTGAGCAAACTGAGCCTGGATCAGTTCAACGTCTCCAACAACCTCCTCAACGGCTCTGTCCCCCTCAACCTTCGGACATTCCCTCAGGATTCCTTTCTTGGCAACTCCCTCTGTGGCCGCCCACTCTCTCTCTGCCCCGGAGATATCGCCGATCCTATCTCCGTCGACAACAACTCCAAGCCAAACAGCCACACCTCCCACAAGTTATCTGCCGGCGCCATTGCGGGGATTGTTGTCGGATCGGTCGTGTTTCTTCTGCTGCTCGTCTTCCTCTTCATTTTCCTGTGCCGGAGCAAAACTGCCAAGAAGACCAGCGCGGTCGACATTGCTACTGTCAAACATCCTGAGGCCGATGCTCCGGTTCTTGCGGAGAAGGGGATTCCGGATGTCGAGAACGGTGGTCATGCCAACGGAAATTCTGCGGCGGCTGTCGCTGCGGTTTCGGCGGGGAACAAGGCGGAAGTGAACGGTGGTGGGGCAGCGAAGAAGTTGGTGTTTTTCGGGAATGCGGCTAGGGCGTTCGATTTGGAGGATTTGCTCAGGGCTTCGGCGGAGGTTTTGGGGAAAGGGACTTTCGGGACGGCGTATAAGGCGGTGCTTGAGGCAGGGCCGGTGGTGGCGGTGAAGAGGTTGAAGGATGTCACGATTTCTGAGAAGGAGTTTAAGGAGAAGATTGAAGCGGTGGGAGCAATGGATCATGAGAGTTTGGTTCCTCTCAGAGCTTTCTATTTCAGTAGGGATGAGAAGCTCCTTGTGTATGATTACATGCCCATGGGAAGCTTGTCTGCACTTTTACATGGAAACAAAGGGGCGGGTAGGACGCCACTGAATTGGGAAGTGAGATCAGGCATTGCGCTTGGAGCTGCCCGTGGCATTGAGTACCTGCATTCACGAGGGCCTAATGTTTCTCATGGAAATATAAAGTCATCCAACATCCTGTTAACCAAGTCATATGATGCCAGAGTGTCTGACTTTGGCCTTGCACACCTCGTTGGCCCCTCCTCTACCCCCAACCGGGTCGCCGGCTACCGTGCACCTGAGGTGACTGATCCTCGCAGGGTGTCTCAGAAGGCAGACGTGTACAGTTTTGGTGTGTTACTCTTGGAACTTCTGACTGGGAAGGCACCTACCCATGCTCTCCTGAATGAGGAAGGAGTAGACCTTCCCAGATGGGTTCAATCTGTGGTTAGAGAAGAGTGGACTTCTGAGGTCTTTGATCTTGAGCTCCTTAGGTATCAGAATGTGGAAGAGGAGATGGTTCAGTTGTTGCAACTTGCAGTTGATTGTGCAGCACAATACCCAGACAAGCGCCCTTCAATGTCTGAAGTGGTAAGGAGCATAGAAGAGTTGCGAAGGTCTAGTCTTAAAGAGGACCAGGATCAAATCCAACATGATCCCGTCAATGATATAGAATTGTAG 1959 0.5467 MLPHKHTLVVVAATLALMLAAADADLAAERAALLALRSAVGGRTLFWNATRDSPCTWAGVQCERDHVVELHLPGVALSGQIPVGIFGNLTQLRTLSLRFNALRGSLPSDLAKCVNLRNLYIQRNLLSGAIPSFLFELPDLVRLNMGFNNFSGPFPTDFNSLTRLKTLFVENNQLSGPIPNLSKLSLDQFNVSNNLLNGSVPLNLRTFPQDSFLGNSLCGRPLSLCPGDIADPISVDNNSKPNSHTSHKLSAGAIAGIVVGSVVFLLLLVFLFIFLCRSKTAKKTSAVDIATVKHPEADAPVLAEKGIPDVENGGHANGNSAAAVAAVSAGNKAEVNGGGAAKKLVFFGNAARAFDLEDLLRASAEVLGKGTFGTAYKAVLEAGPVVAVKRLKDVTISEKEFKEKIEAVGAMDHESLVPLRAFYFSRDEKLLVYDYMPMGSLSALLHGNKGAGRTPLNWEVRSGIALGAARGIEYLHSRGPNVSHGNIKSSNILLTKSYDARVSDFGLAHLVGPSSTPNRVAGYRAPEVTDPRRVSQKADVYSFGVLLLELLTGKAPTHALLNEEGVDLPRWVQSVVREEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAAQYPDKRPSMSEVVRSIEELRRSSLKEDQDQIQHDPVNDIEL 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6731g00013 652 Pfam Protein kinase domain 364 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6731g00013 652 FunFam pollen receptor-like kinase 1 330 435 - -
Vium6731g00013 652 MobiDBLite consensus disorder prediction 632 652 - -
Vium6731g00013 652 Gene3D Transferase(Phosphotransferase) domain 1 436 650 - -
Vium6731g00013 652 PANTHER OS05G0588300 PROTEIN 10 634 - -
Vium6731g00013 652 FunFam Probable inactive receptor kinase RLK902 26 182 - -
Vium6731g00013 652 Gene3D Phosphorylase Kinase; domain 1 328 435 - -
Vium6731g00013 652 ProSitePatterns Protein kinases ATP-binding region signature. 367 389 IPR017441 GO:0005524
Vium6731g00013 652 Gene3D Ribonuclease Inhibitor 139 225 IPR032675 -
Vium6731g00013 652 SUPERFAMILY L domain-like 47 205 - -
Vium6731g00013 652 ProSiteProfiles Protein kinase domain profile. 361 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6731g00013 652 CDD STKc_IRAK 367 630 - -
Vium6731g00013 652 Pfam Leucine rich repeat 115 174 IPR001611 GO:0005515
Vium6731g00013 652 SUPERFAMILY Protein kinase-like (PK-like) 365 628 IPR011009 -
Vium6731g00013 652 FunFam Probable inactive receptor kinase At1g48480 436 639 - -
Vium6731g00013 652 Gene3D Ribonuclease Inhibitor 28 136 IPR032675 -
Vium6731g00013 652 Pfam Leucine rich repeat N-terminal domain 27 62 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6731g00013 Vium-Chr6731 52518 55549 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6731g00013 25 631 Receptor kinase-like Gene Family AT1G48480 64.887 0.0 785
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vium6731g00013 Pkinase 2.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6731g00013 - - gmx:100818955 1057.74