Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6731g00008 ATGGCGAGGCCAGAAAGGACGCGTAGAAATAAAAGCCTAGAGACTCTAATGGATTCGGACAAACCAGGAAGAGGAAGAAATGTGAACCAACAGGGACCCCAGAAGTCCACTCCTGGCTATGGCCTTGAATTCAGTAACCTCTCGTATAGTATCATAAAAAAGCAGAAAAAGGATGGAGTATGGATCAACAAAGAAACATATCTTCTCCATGACATCTCTGGCCAAGCAATAAAAGGTGAAATTATGGCAGTCATGGGGCCTAGTGGTGCTGGAAAATCCACCTTTCTTGATGCATTGGCAGGGAGAATTGCTAGAGGGAGTCTAGAAGGATCAGTTAGAATTGATGGAAAACCAATTACTACAAGCTACATGAAAATGGTGTCATCATATGTGATGCAAGATGACCAGCTCTTCCCTATGTTGACAGTTTTTGAAACATTTATGTTTGCAGCTGAAGTTAGGCTTCCTCCTTCCATTTCCAGGGCAGAAAAGAAGAAGAGGGTGTATGAACTACTTGACCAACTGGGCTTACAGAGTGCTACACATACATATATTGGTGACGAAGGAAGGAGAGGAGTGTCAGGAGGGGAACGACGAAGGGTATCTATTGGCATAGATATCATCCATAAGCCATCACTTCTGTTTCTTGACGAACCTACCTCAGGCCTTGACTCTACAAGTGCTTACAGTGTTGTAGAAAAGGTTAAAGACATAGCTCGAGGAGGAAGCATTGTCCTTATGACCATACACCAGCCTTCATTTAGAATTCAAATGCTCCTGGATCAGATCACAGTCCTTGCAAGGGGAAGATTGATATATATGGGCAAGCCAGATGCACTACAAGATCACATGTCCAGATTTGGAAGGCCTGTTCCTGATGGAGAAAACAGTATTGAGTATCTTCTAGATGTTATAAGTGAATATGATCAAGCAACGGTTGGGCTTGACCCCCTAATCCAATTCCAACGTGATGGCCTGAAACCTGACCCCGCAGCCATGACCCCTGTTCCAAAAACTCCAAGGACACCTTTCACAAGGAACAATCCTTCATCTAAGCACTTAATTAGCCTACGTAGCCAAGGATTTACTGCTGGAACACAACAACCTCATTCTGCACAGTTTAGTTATCGCGACGAGGATGACGATGATGAGAATTTCGATAACTCCCTAGAAAGGAATAGTGTCCCAACACCAAGGAATATGACCAGTGGTGTTCACCCACGTTTGGCTTCTCAGTTCTACAAAGATTTCTCAGCCAAAGATTTCTCTATCTGGCTTTACAATGGTGTCGTAGGAACGCCGCGGCGGCAACCATCATGGACTCCAGCAAGAACACCAGGATGGACGCCTGGGAAAACACCCATGTCAGGACCAAGAAGTGCAGTTTCCTACCAACATTCTGCAGCTTATCGGTATCCTAATCGCCCCAAAACTCCTGCAGTGGATAGTCAGTCTATGGACTATTCGGAAACTTCATATGCCCCTTCTCTTGAAGGATTTGAGATTGAGGAAGTGGTTGATGAGCCAGTTTTAGGATCCAAGTACGCAAACCCATGGTGGCGTGAGGTTGCAGTGCTCTCGTGGCGAACAGCACTAAATGTAATTCGCACCCCGGAACTCTTCCTCTCTCGTGAGATTGTGTTAACTGTTATGGCACTTATCCTGTCCAGCATTTTTGGAAATCTGAGTCATCATTCTTTCAAAGACATCAATAGGCTCCTCAATTTCTACATCTTTGCAGTGTGCCTTGTTTTCTTTTCCTCCAATGACGCAGTCCCATCTTTCATCATGGAGAGGTTCATCTTCATCAGGGAGACTTCCCATAACGCTTATCGTGCTTCTTCATATGTTATTTCTTCCCTCATTGTTTACCTCCCATTTTTCGCTGTTCAAGGACTTACATTTGCTGCCATAACCAGAGAAATGCTCCGCTTGAATAGCAGTCTCTTGTATTTCTGGCTGACACTTTATGCCTCGCTTATTACTACTAATGCATATGTGATGCTTGTCAGTGCACTCGTGCCTAGTTACATCACAGGGTATGCAGTAGTCATAGCCACAACAGCACTCTTCTTTTTGACCTGCGGTTTCTTCCTCAAGCAAACTCAGATACCCATTTATTGGAGGTGGCTTCACTATGTTTCTGCAATCAAATATCCTTTTGAGGCATTGCTAACAAATGAATTCAAGAACCTCGACTGCTACACAGGAAACAAAGCAGAATTATCCCCCGGACCTTTAGGAGACTTGAAGCCCAGCAAACATCATAACTCCAGTCTGCCAGATAACTGCTTATTAGGTTGTTCTTCTATTTGGTTTTGA 2322 0.4414 MARPERTRRNKSLETLMDSDKPGRGRNVNQQGPQKSTPGYGLEFSNLSYSIIKKQKKDGVWINKETYLLHDISGQAIKGEIMAVMGPSGAGKSTFLDALAGRIARGSLEGSVRIDGKPITTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRAEKKKRVYELLDQLGLQSATHTYIGDEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARGGSIVLMTIHQPSFRIQMLLDQITVLARGRLIYMGKPDALQDHMSRFGRPVPDGENSIEYLLDVISEYDQATVGLDPLIQFQRDGLKPDPAAMTPVPKTPRTPFTRNNPSSKHLISLRSQGFTAGTQQPHSAQFSYRDEDDDDENFDNSLERNSVPTPRNMTSGVHPRLASQFYKDFSAKDFSIWLYNGVVGTPRRQPSWTPARTPGWTPGKTPMSGPRSAVSYQHSAAYRYPNRPKTPAVDSQSMDYSETSYAPSLEGFEIEEVVDEPVLGSKYANPWWREVAVLSWRTALNVIRTPELFLSREIVLTVMALILSSIFGNLSHHSFKDINRLLNFYIFAVCLVFFSSNDAVPSFIMERFIFIRETSHNAYRASSYVISSLIVYLPFFAVQGLTFAAITREMLRLNSSLLYFWLTLYASLITTNAYVMLVSALVPSYITGYAVVIATTALFFLTCGFFLKQTQIPIYWRWLHYVSAIKYPFEALLTNEFKNLDCYTGNKAELSPGPLGDLKPSKHHNSSLPDNCLLGCSSIWF 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6731g00008 773 MobiDBLite consensus disorder prediction 436 460 - -
Vium6731g00008 773 Pfam ABC-2 type transporter 523 729 IPR013525 GO:0016020|GO:0140359
Vium6731g00008 773 Gene3D - 42 288 IPR027417 -
Vium6731g00008 773 MobiDBLite consensus disorder prediction 326 403 - -
Vium6731g00008 773 FunFam ABC transporter G family member 6 57 284 - -
Vium6731g00008 773 ProSitePatterns ABC transporters family signature. 193 207 IPR017871 GO:0005524|GO:0016887
Vium6731g00008 773 MobiDBLite consensus disorder prediction 1 41 - -
Vium6731g00008 773 CDD ABCG_EPDR 42 275 - -
Vium6731g00008 773 MobiDBLite consensus disorder prediction 1 21 - -
Vium6731g00008 773 MobiDBLite consensus disorder prediction 340 373 - -
Vium6731g00008 773 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 24 735 - -
Vium6731g00008 773 MobiDBLite consensus disorder prediction 24 41 - -
Vium6731g00008 773 Pfam ABC transporter 69 221 IPR003439 GO:0005524
Vium6731g00008 773 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 42 293 IPR003439 GO:0005524
Vium6731g00008 773 SMART AAA_5 78 278 IPR003593 GO:0016887
Vium6731g00008 773 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 287 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6731g00008 Vium-Chr6731 26105 29596 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6731g00008 79 400 Calmodulin-binding Proteins AT2G36910 24.233 1.29e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6731g00008 K05681 - gmx:100819497 1348.95