Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6729g00005 ATGGCAGATCTTTCTATCTTTGGAAGTTCTGAGCGTCTCGAGCAAGCGTTCATTACATTAAAAAAGGGCACGCAGTTAGTAAAGTATAGTCGAAAAGGGAAGCCGAAATTTTGTTCGTTCAGACTCTCATCGGATGAAACAAAGCTGATTTGGATTTCTCATGGAAAGGAAAAGAATCTAAAATTAGCTGCTGTTTCACACATCATCCCAGGACAGAGAACAGCTGTCTTTAGAAGATACTTGCGTCCTGAAAAGGATTATCTGTCATTTTCACTGATTTACAAGAAGGGGGAAAGATCACTTGATCTGATCTGCAAGGACCAAGCAGAGGTAGAGATATGGTTTTCATGTCTTAAAGCATTAATTTCCTCTGGAGAGCGTATTAAGCGTGGAATAAGTGATTTAAGCAATGATTGTGTTGACTTAGTTGCTGGAACACTAGAGTTCGCATCAAGCATTAGCCGTAGCAGGTTTTCTTTTGAATCGGCATCTCATGAATCTACATCGTCTTGGTCCAGGTCGGATACAAATATGGCACAGAGGACAAGTATCGGAGATGGTTCTCGTGTTAGTATATCAAGTATTAGCCACTCAAGTAGTGTAGGATCAGGACTAGATGACATAGAATCTCTTGGTGATGTTTTCATATGGGGAGAGGTTTGGGGAGATGGCAATTCATCTGATGGATTGGGGAGCCAAGCTTCTGGTAAGATTGATGTGTTGACTCCTAAGGCATTAGAATCTGATGTTGTTCTTGATGTCAATCAGATTGGGCCCGGTGTACGTCACATTGCGTTAGTTACAAGGCAAGGTGAGCTTTTTACATGGGGAGAGGACTCTGGTGGAAGACTTGGCCATGGCTTTGAAAAAGATTTTGGCCGACCTCATCTTGTAGAGTCCCTAGCAATTACCAACATGTCTTCTGTTGCATGTGGTGAATATCATTCATGTGCCGTGTCTGTATCTGGTGACTTGTTCACCTGGGGTGATGCTACAAATAGTGCAGGACTTCTTGGTCATGGCAGTGATGTTAGCTACTGCATACCAAAGAGGGTGAGTGGCGCTTTAGAGGGACACCAGGTTGTATCCGTAGCATGCGGCGCATGGCATTCAGCATTAGCAACCACCCTTGGGAAATTGTTTACCTTTGGTGATGGAAGATTTGGTGTATTAGGCCATGGAGATAGAGAATGTGTATCATATCCAAAGCAGGTACAATTATTGAGTGGACAAAAGGCTATTAAAGTTGCATGTGGAATGTGGCATTCAGCTGCTATTATAGAGATTATGGATCCGTCTGGTTCAAACCCTTCATCCAAGAAGATCTTCACATGGGGTGATGGTGATCAGTATCGTTTGGGTCATGTTAACAAGGAAAATTACCTTCAACCAACTTGTGTAGCTGCCCTTGCTGATTATAGCTTTAACCAGATTGCATGTGGGTACACTATGACTGTTGCACTCACTGTATCTGGTCATGTTTTTACAATGGGAGGCACAGCATATGGTCAACTAGGAAATCCAAATTCTGATGGAAAAGTCCCAATTCTAGTCCGAGATAAGTTGGTAGGTGAGTTCGTGGAGGAAATAGCATGCGGAGCAAATCATGTCGCTGTATTGACTTCAAGAAGTGAACTATATACTTGGGGTAGAGGTGCCAATGGAAGACTAGGACACGGAGACACAGATGACCAGAAAACTCCAACCTTGGTAGAAGCCTTGAAAGACAGGCATGTTAGGAATATCGCATGTGGCTCTACCTTTACATGTTGTATATGCTTACATAAATGGCTTTCTGGAGTTGACCAATCTGTTTGCTCTGATTGTCGACAACCGTTTGGTTTTACCCGAAAAAGGCATAATTGCTATAATTGTGGATTGGTGTTTTGCCATCCTTGTAGTTCAAAAAAGGCTTCTAGAGCAGCATTGGCTCCGACACCTAGCAAACCACATCGTGTGTGTGATGCTTGTTATGCTAAGCTAAAAGGTGCTGATAGTGCTTCAAACTTAAATAAAGAAATTAGTCGTCCTTCCTCGTATGGAAGGGAAAAATTTGAGCGGGCAGAGGTGAAGTCTTCCAGAATTCTCTTGCCTCCCATCACAGAACCCATAAAATACCTTGAGATTAGGACTATTAAGCATGGAAATATAGATGAGACTTCTTCCATGGTCCGAGCAGCTCAAGTTCCTATATCTTTGCAATTGAAAGATGTCGCATTTCCAATTTCGCTGAGTTCTGCACAGAATTTTTTCAAGCCTCTTATTCAGTCAAGTCATACTCAGTCTCCACCTCCACCAATTAGACCTATGTCACCATATGCTAAAAGAAGACCACCAAGCCCACCTCGTTCTACCTCCCCTGGATTTTCAAGAAGCCTTATTGATAATTTAAAAAAGAAAAGTGATCATATGACTCAAGAAGTCTCAAAATTGCAAAACAAAAATAAAAGTTTGAAGCAGAAGAGTGAAACACAAGAAATGAAGATTCAGGAGCTTCAGAAAGTTATTGAAGAGGAATCTTCTAAGTTTAGGGAAGCAAAGGATTTTATTAAGTCCATGACAGATAAGTTGAGGGAAGTGATTGAGACTTTGCAATCTGAGATTCCTGACAATGAGACTTTGAGAACCATGCATGCTCAAGCTGAAGAGTTTCTTAATGAAGAAAAACGTTTGGAACCTTCTTCCTCCCAACTGAGCCTCAACTCTAATCCACAAAGTGCACCTGATGTACCTGCCTCGGATAGTAACTCTCCAAAGCTGAAAGAGCGAAGCGATGATACTTCCGGGGTTGTTCCATCCCCAGACGGAGAAAATACTTTTGAAGAAACCGGCAACTCATCTGCATCTAGTAGAGCAGTGAGTCCACCAAACTCAAGAAATATTTCAAGATTAAGGGACTCCAATGTACATTTGACAGAAGGAGAAAGATCAATCATTGAACAATTTGAGTCAGGTGTTTATGTCACCCTCGTTGTACTACCTAATGGTTACAAAGTTTTCAAACGAATTAGATTCAGTAAACGAAGATTCAATGAGCAGCAAGCAGAAGAATGGTGGAACCAAAACAAAGATAAGGTGTATAGTAAATACATTCCACCACCACCCACAAAAAATGCAATTACTGAACCATCTGTTACCTCTACAAATGCTGAAGAGAATAGTGAGGCGTTACCTTCTTCCTAA 3183 0.416 MADLSIFGSSERLEQAFITLKKGTQLVKYSRKGKPKFCSFRLSSDETKLIWISHGKEKNLKLAAVSHIIPGQRTAVFRRYLRPEKDYLSFSLIYKKGERSLDLICKDQAEVEIWFSCLKALISSGERIKRGISDLSNDCVDLVAGTLEFASSISRSRFSFESASHESTSSWSRSDTNMAQRTSIGDGSRVSISSISHSSSVGSGLDDIESLGDVFIWGEVWGDGNSSDGLGSQASGKIDVLTPKALESDVVLDVNQIGPGVRHIALVTRQGELFTWGEDSGGRLGHGFEKDFGRPHLVESLAITNMSSVACGEYHSCAVSVSGDLFTWGDATNSAGLLGHGSDVSYCIPKRVSGALEGHQVVSVACGAWHSALATTLGKLFTFGDGRFGVLGHGDRECVSYPKQVQLLSGQKAIKVACGMWHSAAIIEIMDPSGSNPSSKKIFTWGDGDQYRLGHVNKENYLQPTCVAALADYSFNQIACGYTMTVALTVSGHVFTMGGTAYGQLGNPNSDGKVPILVRDKLVGEFVEEIACGANHVAVLTSRSELYTWGRGANGRLGHGDTDDQKTPTLVEALKDRHVRNIACGSTFTCCICLHKWLSGVDQSVCSDCRQPFGFTRKRHNCYNCGLVFCHPCSSKKASRAALAPTPSKPHRVCDACYAKLKGADSASNLNKEISRPSSYGREKFERAEVKSSRILLPPITEPIKYLEIRTIKHGNIDETSSMVRAAQVPISLQLKDVAFPISLSSAQNFFKPLIQSSHTQSPPPPIRPMSPYAKRRPPSPPRSTSPGFSRSLIDNLKKKSDHMTQEVSKLQNKNKSLKQKSETQEMKIQELQKVIEEESSKFREAKDFIKSMTDKLREVIETLQSEIPDNETLRTMHAQAEEFLNEEKRLEPSSSQLSLNSNPQSAPDVPASDSNSPKLKERSDDTSGVVPSPDGENTFEETGNSSASSRAVSPPNSRNISRLRDSNVHLTEGERSIIEQFESGVYVTLVVLPNGYKVFKRIRFSKRRFNEQQAEEWWNQNKDKVYSKYIPPPPTKNAITEPSVTSTNAEENSEALPSS 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6729g00005 1060 MobiDBLite consensus disorder prediction 891 913 - -
Vium6729g00005 1060 Coils Coil 794 842 - -
Vium6729g00005 1060 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 378 429 IPR000408 -
Vium6729g00005 1060 Pfam Regulator of chromosome condensation (RCC1) repeat 491 540 IPR000408 -
Vium6729g00005 1060 Pfam Regulator of chromosome condensation (RCC1) repeat 378 426 IPR000408 -
Vium6729g00005 1060 Pfam Regulator of chromosome condensation (RCC1) repeat 271 319 IPR000408 -
Vium6729g00005 1060 Pfam Regulator of chromosome condensation (RCC1) repeat 442 488 IPR000408 -
Vium6729g00005 1060 Pfam Regulator of chromosome condensation (RCC1) repeat 322 373 IPR000408 -
Vium6729g00005 1060 Pfam Regulator of chromosome condensation (RCC1) repeat 545 592 IPR000408 -
Vium6729g00005 1060 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 492 543 IPR000408 -
Vium6729g00005 1060 Gene3D - 434 602 IPR009091 -
Vium6729g00005 1060 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 600 662 IPR017455 -
Vium6729g00005 1060 MobiDBLite consensus disorder prediction 1026 1060 - -
Vium6729g00005 1060 Gene3D - 145 433 IPR009091 -
Vium6729g00005 1060 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 271 322 IPR000408 -
Vium6729g00005 1060 SUPERFAMILY FYVE/PHD zinc finger 596 667 IPR011011 -
Vium6729g00005 1060 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 544 595 IPR000408 -
Vium6729g00005 1060 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 416 426 IPR000408 -
Vium6729g00005 1060 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 440 491 IPR000408 -
Vium6729g00005 1060 SMART fyve_4 595 663 IPR000306 GO:0046872
Vium6729g00005 1060 CDD FYVE_like_SF 606 658 - -
Vium6729g00005 1060 PRINTS Chromosome condensation regulator RCC1 signature 364 380 IPR000408 -
Vium6729g00005 1060 PRINTS Chromosome condensation regulator RCC1 signature 481 499 IPR000408 -
Vium6729g00005 1060 PRINTS Chromosome condensation regulator RCC1 signature 323 339 IPR000408 -
Vium6729g00005 1060 PRINTS Chromosome condensation regulator RCC1 signature 539 560 IPR000408 -
Vium6729g00005 1060 PRINTS Chromosome condensation regulator RCC1 signature 273 289 IPR000408 -
Vium6729g00005 1060 PRINTS Chromosome condensation regulator RCC1 signature 380 394 IPR000408 -
Vium6729g00005 1060 MobiDBLite consensus disorder prediction 756 824 - -
Vium6729g00005 1060 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 56 857 - -
Vium6729g00005 1060 SUPERFAMILY PH domain-like 14 122 - -
Vium6729g00005 1060 MobiDBLite consensus disorder prediction 931 965 - -
Vium6729g00005 1060 Pfam Transcription factor regulating root and shoot growth via Pin3 976 1030 IPR013591 -
Vium6729g00005 1060 MobiDBLite consensus disorder prediction 795 824 - -
Vium6729g00005 1060 SUPERFAMILY RCC1/BLIP-II 212 597 IPR009091 -
Vium6729g00005 1060 MobiDBLite consensus disorder prediction 888 966 - -
Vium6729g00005 1060 MobiDBLite consensus disorder prediction 759 785 - -
Vium6729g00005 1060 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 323 377 IPR000408 -
Vium6729g00005 1060 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 603 672 IPR013083 -
Vium6729g00005 1060 ProSiteProfiles BRX domain profile. 976 1031 IPR013591 -
Vium6729g00005 1060 Pfam FYVE zinc finger 596 661 IPR000306 GO:0046872
Vium6729g00005 1060 FunFam PH, RCC1 and FYVE domains-containing protein 1 183 431 - -
Vium6729g00005 1060 MobiDBLite consensus disorder prediction 1040 1060 - -
Vium6729g00005 1060 CDD PH_PLC_plant-like 12 123 - -
Vium6729g00005 1060 Gene3D - 12 130 IPR011993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6729g00005 Vium-Chr6729 32073 39056 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6729g00005 973 1054 Major Intrinsic Protein MIP AT1G31880 32.927 1.14e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6729g00005 - - gmx:100778984 1624.37