Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6729g00002 ATGGTTAGAGCTCCTTGTTGTGAGAAGATGGGATTGAAAAAGGGTCCTTGGACTCAAGACGAAGATCAAATCCTCATATCATACATCCAAAAACATGGCCATGGAAACTGGCGTGCGCTTCCAAAGCTTGCAGGGCTATTGAGGTGTGGAAAGAGTTGCAGACTGAGATGGATTAACTACTTAAAACCTGATATCAAAAGAGGAAATTTCTCGAGTGAAGAAGAAGAGATTATCATCAAGATGCATGAGTTGCTGGGAAATAGGTGGTCAGCAATAGCAGCAAAACTACCAGGAAGAACTGACAATGAAATTAAGAATGTGTGGCACACTCATTTGAAGAAGAAGTTGCTGAATTCAGATAGCAAAAGGGTTGTTTCAAATCCAAAAATCAAACTATCTGATTCTAATTCCAGCACCCTAACATCATCCTCAGCATGCACTTCTTCCAGTGATTTTTCATCATTCAGTGAAGAAAACAAAAGCACGAACAACAACAGCATGATCAAGAGTGAAGACACAGAGTCTGAGGAGACAACAATGCCTCCAATTGATGAAAGCTTTTGGTCAGAGGCAACAGTTGAAGATGAAAGCTCCACCATGATGATGCCATCAAATTCTTGGACAATTTCCAATGAACCACAATTTAATCATGTGGAAACTTTCCAACAACATAGTTTTGGTTATAATGGTTCAAACTTTGATGATGGCATGGATTTTTGGTATGACATATTCATCAGATCAGAAGAGTCAATAGAGTTGCCGGAGTTCTGA 771 0.3956 MVRAPCCEKMGLKKGPWTQDEDQILISYIQKHGHGNWRALPKLAGLLRCGKSCRLRWINYLKPDIKRGNFSSEEEEIIIKMHELLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKKLLNSDSKRVVSNPKIKLSDSNSSTLTSSSACTSSSDFSSFSEENKSTNNNSMIKSEDTESEETTMPPIDESFWSEATVEDESSTMMMPSNSWTISNEPQFNHVETFQQHSFGYNGSNFDDGMDFWYDIFIRSEESIELPEF 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6729g00002 256 CDD SANT 69 112 IPR001005 -
Vium6729g00002 256 CDD SANT 16 61 IPR001005 -
Vium6729g00002 256 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vium6729g00002 256 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Vium6729g00002 256 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 198 - -
Vium6729g00002 256 SMART sant 66 114 IPR001005 -
Vium6729g00002 256 SMART sant 13 63 IPR001005 -
Vium6729g00002 256 Gene3D - 13 66 - -
Vium6729g00002 256 MobiDBLite consensus disorder prediction 131 195 - -
Vium6729g00002 256 Gene3D - 68 140 - -
Vium6729g00002 256 MobiDBLite consensus disorder prediction 131 169 - -
Vium6729g00002 256 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vium6729g00002 256 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vium6729g00002 256 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vium6729g00002 256 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vium6729g00002 256 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vium6729g00002 256 FunFam MYB-related transcription factor 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6729g00002 Vium-Chr6729 18827 21208 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6729g00002 1 256 MYB Transcription Factor Family AT2G31180 49.621 1.25e-80 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium6729g00002 Myb_DNA-binding 3.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6729g00002 K09422 - gmx:100806975 397.512