Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6729g00001 ATGGTTAGAGCTCCTTGTTGTGAGAAGATGGGATTGAAAAAGGGTCCTTGGACTCAAGACGAAGATCAAATCCTCATATCATACATCCAAAAACATGGCCATGGAAACTGGCGTGCGCTTCCAAAGCTTGCAGGGCTATTGAGGTGTGGAAAGAGTTGCAGACTGAGATGGATTAACTACTTAAAACCTGATATCAAAAGAGGAAATTTCTCGAGTGAAGAAGAAGAGATTATCATCAAGATGCATGAGTTGCTGGGAAATAGGTAG 267 0.4195 MVRAPCCEKMGLKKGPWTQDEDQILISYIQKHGHGNWRALPKLAGLLRCGKSCRLRWINYLKPDIKRGNFSSEEEEIIIKMHELLGNR 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6729g00001 88 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vium6729g00001 88 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 88 IPR017930 -
Vium6729g00001 88 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vium6729g00001 88 CDD SANT 16 61 IPR001005 -
Vium6729g00001 88 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 88 - -
Vium6729g00001 88 Gene3D - 13 66 - -
Vium6729g00001 88 SMART sant 13 63 IPR001005 -
Vium6729g00001 88 SUPERFAMILY Homeodomain-like 15 88 IPR009057 -
Vium6729g00001 88 FunFam MYB-related transcription factor 13 66 - -
Vium6729g00001 88 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6729g00001 Vium-Chr6729 12984 14492 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6729g00001 1 88 MYB Transcription Factor Family AT4G21440 75.000 8.23e-50 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium6729g00001 Myb_DNA-binding 3.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6729g00001 K09422 - gmx:100806975 185.267