Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium671g00006 CTTCACAGGTATAGGCAATATGGGTTGTGGGAAAGGTATGCAGAATTATACCCAAATGAAGATTTAATTTACACTGTGGGTGTAAGTGATTATACAAAAGATTGGTTCTTTGCACAGGTCACAAGAAAGAAAGAAGATGGCAGTTACCAAGGAACTACATGGCAAATTAAGTTCAACCTCGATGACACAGAGGCAAGTAAAATCTACAAACTGCGGTTGGCACTTGCAAGTGCAAATGTGTCAGAATTACAGGTTAGAGTGAATGATCCGGAACAAGACCCTCCTGTGTTTACTACAGGGGTGATTGGAAAAGACTTTTCAATAGCTAGACATGGAATTCATGGACTCTATTGGCTATTCAACATTGATGTGTCTGGGTTTTTGCTAGTAAAAGGTGTTAACACTCTGTTTTTAACTCAAACTGTGGCAAATGGTCCCTTGGCTCGCTTTCAGGGAGTTATGTATGATTATATACGCCTAGAAGGTCCTAACCCTTTTTCTGCTATAAAAGAGTATTAA 519 0.3931 LHRYRQYGLWERYAELYPNEDLIYTVGVSDYTKDWFFAQVTRKKEDGSYQGTTWQIKFNLDDTEASKIYKLRLALASANVSELQVRVNDPEQDPPVFTTGVIGKDFSIARHGIHGLYWLFNIDVSGFLLVKGVNTLFLTQTVANGPLARFQGVMYDYIRLEGPNPFSAIKEY 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium671g00006 172 SUPERFAMILY Galactose-binding domain-like 3 161 IPR008979 -
Vium671g00006 172 Pfam Polysaccharide lyase family 4, domain III 15 160 IPR029411 -
Vium671g00006 172 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 2 164 - -
Vium671g00006 172 Gene3D - 9 161 - -
Vium671g00006 172 CDD RGL4_C 4 161 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium671g00006 3 163 Polysaccharide Lyase AT4G24430 65.644 1.82e-70 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium671g00006 K18195 - gmx:100815677 300.827