Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium671g00004 ATGGCATCACCAGCAGTGAAGCTTTATGTGGAAGACGATCAAGTGGTTATGGACAATGGCATAGTGCAAGTGTATTTATCCAACCCTGGTGGATTTGTTACCAGAATTCAATATAGTGGCATTGATAATCTGCTTGAAACTCGTAACAAAAGTGGAGATAGAGGGTACTGGGACGTTGTTTGGAGTGTAGCTGGAAGTACAGGAACCACGGGCACATTTGAACGGATTGTGGGAACAAGTTTTAGTGTGATAGTGGAAAATGAGAAAGAGGTTGAAATCTCATTCACAAGTAAGTGGGATCCATCTCTAAAGGGAGAGAAAGCACCTCTTAATATTGATAAGAGGTATGTGATGCTTTCCAATTCCTCAGGATTTTACTCCTACACCATCTTTGAACATTTACAGGACTGGCCTGCTTTCAACATACCTCAAATAAGGACTGTTTACAAACTTAGTAAAGAAAAGTTTCATTACATGGTGGTGTCTGATAATAGACAAAGATTTATGCCTCTCCCTGATGACAGATTGCCAGGAAGAGGGGAAGAACTTGTTCCACCAGAAGCAGTTTTGCTTGTTAATCCTTTGGAGCCAGAGTTTAAGGGAGAGGTTGATGACAAGTACCAATACTCAAGTGAAAACAAAGATCTTATGGTTCATGGATGGATAAGTTCTCAATCTCAAACAGACCCATTTGTAGGGTTTTGGGTAATCATACCAAGCAATGAGTTTCGTTCAGGTGGCCTAGTAAAACAGAACCTTACTTCCCATGTCGGCCCAATAAGCCTGGCTATGTTTCTGAGTGCTCATTACGCAGGAGAAGATATAGTTCTGAAATTGCAACCAAAGGAGCCATGGAAGAAAGTTTTTGGGCCAACTTTTGTTTATCTTAACACTTTATTAGATGGTGATGACCCCAAAGTGCTATGGGAAGATGCTAAAGATAAGACGAAGGCAGATGTTCAAAGTTGGCCCTATGATTTTCCAGCCTCCGAAGATTTTCAGAAGTCTACCCAACGAGGCAGTGTCTGTGGCACATTACTAGTCCAAGACAGGTTTTTGAGTGATGAGTATATAATAGCAGAAGGCGCTTATATAGGAGTGGCAGCACCAGGAGAATCTGGATCATGGCAAAGAGAATGCAAGGGATACCAATTTTGGAGCAAAGCAAACGAGAAAGGATACTTCTCAATCGAGAATATACGCAGTGGGAATTACAATCTCTATGCATGGGTTCCAGGTTTCATTGGAGAGTATTGGAGTAATGTTCTCCTCACCATAACACCAGGTTGTGAAATTGATGTTGGTGAGATTGTTTTTTAG 1320 0.4129 MASPAVKLYVEDDQVVMDNGIVQVYLSNPGGFVTRIQYSGIDNLLETRNKSGDRGYWDVVWSVAGSTGTTGTFERIVGTSFSVIVENEKEVEISFTSKWDPSLKGEKAPLNIDKRYVMLSNSSGFYSYTIFEHLQDWPAFNIPQIRTVYKLSKEKFHYMVVSDNRQRFMPLPDDRLPGRGEELVPPEAVLLVNPLEPEFKGEVDDKYQYSSENKDLMVHGWISSQSQTDPFVGFWVIIPSNEFRSGGLVKQNLTSHVGPISLAMFLSAHYAGEDIVLKLQPKEPWKKVFGPTFVYLNTLLDGDDPKVLWEDAKDKTKADVQSWPYDFPASEDFQKSTQRGSVCGTLLVQDRFLSDEYIIAEGAYIGVAAPGESGSWQRECKGYQFWSKANEKGYFSIENIRSGNYNLYAWVPGFIGEYWSNVLLTITPGCEIDVGEIVF 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium671g00004 439 CDD RGL4_M 338 437 IPR029413 -
Vium671g00004 439 Pfam Rhamnogalacturonate lyase family 7 203 IPR010325 -
Vium671g00004 439 FunFam Rhamnogalacturonate lyase B 335 434 - -
Vium671g00004 439 Gene3D - 335 433 - -
Vium671g00004 439 Pfam Polysaccharide lyase family 4, domain II 361 433 IPR029413 -
Vium671g00004 439 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 13 439 - -
Vium671g00004 439 CDD RGL4_N 6 306 - -
Vium671g00004 439 SUPERFAMILY Starch-binding domain-like 337 433 IPR013784 GO:0030246
Vium671g00004 439 Gene3D - 6 279 IPR014718 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium671g00004 Vium-Chr671 13025 17750 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium671g00004 1 439 Polysaccharide Lyase AT1G09890 59.091 0.0 547
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium671g00004 K18195 - gmx:100815677 790.03