Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6716g00001 ATGAACCCTAGCTCCGTCGCGGACGGCCGCGAAGACCTCAACGAAGCCGCGACAGACGGCAAGACGTTCGATGACCTCGGCCTGGCGGAGTGGGTCGTTAGTACGTGCCGGGAGCTCGGAATGCGGATGCCACGACACGTGCAGCAGCGTTGCATACCGCCTGTGCTCGAGGGCCGGCACGTGCTTGGCATCGACGAGACTGGGAGCGGGAAAACGGCGGCCTTCGCTCTTCCGATCCTGCATCGACTCGCTGAGCACCCCTTCGGCGTTTTCGCACTCGTAGTGACGCCCACGCGCGAACTGGCGTTCCAGCTGGCGGAGCAGTTCCGCGTTCTGGGCTCTGCCGTGCATCTTCGCATCACGGTTGTGGTAGGCGGCATGGATATGCTCAAGCAGGCGAAGGATTTGGTTGCGAGGCCGCACCTCGTCATTGCCACACCTGGGAGAATCCACGTCTTGCTCCGTGATAATCCTGATATTTCTCCTGTTTTCTCCAGAACCAAGTTTCTTGTCTTGGATGAAGCAGATCGAGTTCTGGATGCTTGTTTTCAGGAGGAATTGAAATTTATCTTTCAGTGCTTACCTGAAAATCGACAAAATCTGTTCTTTTCTGCGACAACTACAAGTAATCTGCAAAAGTTGCAAGAACGTTACCAAGATAAGATGTATGTCTACGAGGCATATGAAGGTTTTAAAACCGTTGAATCACTTAAGCAACAGGTGATATTCATCCCTAAAAAGGTGAAGGATGTATATTTGATGTATATCTTGTCAAAAATGGAGGAGATGGGAATTCGGTCTGCCATCGTGTTTATCTCAACATGCAGGTATATTTCTACATTGTATGTTTAG 852 0.5117 MNPSSVADGREDLNEAATDGKTFDDLGLAEWVVSTCRELGMRMPRHVQQRCIPPVLEGRHVLGIDETGSGKTAAFALPILHRLAEHPFGVFALVVTPTRELAFQLAEQFRVLGSAVHLRITVVVGGMDMLKQAKDLVARPHLVIATPGRIHVLLRDNPDISPVFSRTKFLVLDEADRVLDACFQEELKFIFQCLPENRQNLFFSATTTSNLQKLQERYQDKMYVYEAYEGFKTVESLKQQVIFIPKKVKDVYLMYILSKMEEMGIRSAIVFISTCRYISTLYV 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6716g00001 283 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 171 179 IPR000629 -
Vium6716g00001 283 Gene3D - 11 225 IPR027417 -
Vium6716g00001 283 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 21 49 IPR014014 GO:0003724
Vium6716g00001 283 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 20 282 - -
Vium6716g00001 283 SMART ultradead3 40 240 IPR014001 -
Vium6716g00001 283 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 52 225 IPR014001 -
Vium6716g00001 283 Pfam DEAD/DEAH box helicase 46 214 IPR011545 GO:0003676|GO:0005524
Vium6716g00001 283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 221 IPR027417 -
Vium6716g00001 283 CDD DEADc_DDX49 23 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6716g00001 Vium-Chr6716 17891 19507 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6716g00001 4 281 Eukaryotic Initiation Factors Gene Family AT3G13920 29.749 1.42e-30 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6716g00001 K14778 - gmx:100804060 464.922