Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6714g00001 ATGGAAGGGAATTTGTCTCAGGGAGGTATGGTTCAGGGTGGGAGTTCCTTTGGTGGTTTTGATCTGCCTGGATCAATGAGGGTTCATCGGCAAGGGCATCATCCTCATTCCATGAATCAACATCAAACTCATCCTTGTCAAGGGCCTTCAGTGCATTCCTCAGTTCATGATGGTTTTCCTCTCACAATGGGAACCTTGCAGAACTGCGATCAAACAATGGCAATGACTGAGTTTAGTCAGGGAGATAGAAACAAGAACTCTCCAAGTGATGAAAGCTTTGCTGAGGAAGGTGTTGATGGTCATCAAGAAGGAGGTAGAGGGAAAAAGGGGTCGCCTTGGCAGAGGGTGAAGTGGACTGATAAGATGGTGAGGCTTCTGATAACGGCTGTTTCTTACATAGGTGAAGATGCACCATCCGACTGTGGTGGCGCAAGGAGAAAAATTACAGTCCTACAGAAAAAAGGGAAGTGGAAATCGGTTTCCAAGGTCATGGCTGAAAGAGGTTATCGTGTTTCACCTCAGCAGTGTGAGGATAAATTCAATGATCTCAATAAAAGGTACAAAAAACTTAATGATATGCTAGGCCGGGGAACTTCTTGTCAGGTTGTTGAGAATCCTTCTCTATTGGATGTGATAGATTATCTTTCTGAGAAAGAAAAAGATGAAGTTCGAAAAATATTGAGCTCGAAACACTTTTTCTATGAAGAGATGTGTTCTTACCATAATTGTAACAGGTTGCATTTACCCCATGATCTGGAATTGCAACGATCACTTCAGTTGGCTCATAGAAATAGAGATGATCATGACAGTGATGATGTCAGAAGGTCTCAGCATGATGATCATGATGAAGATGATCCAGAAGTGGAAACTGATGATCATGATGATTTTGAGGAGAATTATGCTACTCATGCAGATAGTAGAGGAGTCTATGGGGAAGCGGGGCGACCTATGAAGAGATCGAAACCAGGGCAAGGACATGAAGATGCTGCTACTTTTGGCAGTGCTTTAAACAGCCAAGAGTATAACAAAAGTTCATACCCTCATATGGTTCAATCTGATGTCAATCAAGCTGCACCCGAGAAAATGAGTTCACCATGGTTACAGAAGCAATGGGTTGATTCTCGTTCACTTCAGTTAGAAGAGCAGAAGCTACAAATTCAGGTTGAGATGTTGGAGCTGGAGAAACAAAGATTCAAGTGGCAGAAGTTTAGTAAGAAAAAGGACCGGGAGTTGGAAAAGTTGAAGCTGGAGAATGAAAGAATGAAGCTTGAGAATGAACGTATTGCTTTAGAACTCAAACGAAAGGGAGTGGGTGCTGACTTTAACTAG 1329 0.4259 MEGNLSQGGMVQGGSSFGGFDLPGSMRVHRQGHHPHSMNQHQTHPCQGPSVHSSVHDGFPLTMGTLQNCDQTMAMTEFSQGDRNKNSPSDESFAEEGVDGHQEGGRGKKGSPWQRVKWTDKMVRLLITAVSYIGEDAPSDCGGARRKITVLQKKGKWKSVSKVMAERGYRVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCQVVENPSLLDVIDYLSEKEKDEVRKILSSKHFFYEEMCSYHNCNRLHLPHDLELQRSLQLAHRNRDDHDSDDVRRSQHDDHDEDDPEVETDDHDDFEENYATHADSRGVYGEAGRPMKRSKPGQGHEDAATFGSALNSQEYNKSSYPHMVQSDVNQAAPEKMSSPWLQKQWVDSRSLQLEEQKLQIQVEMLELEKQRFKWQKFSKKKDRELEKLKLENERMKLENERIALELKRKGVGADFN 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6714g00001 442 Coils Coil 374 396 - -
Vium6714g00001 442 Pfam Myb/SANT-like DNA-binding domain 115 240 IPR044822 -
Vium6714g00001 442 Coils Coil 404 433 - -
Vium6714g00001 442 MobiDBLite consensus disorder prediction 1 54 - -
Vium6714g00001 442 MobiDBLite consensus disorder prediction 262 282 - -
Vium6714g00001 442 MobiDBLite consensus disorder prediction 262 330 - -
Vium6714g00001 442 Gene3D - 118 189 - -
Vium6714g00001 442 PANTHER F16F4.11 PROTEIN-RELATED 1 441 - -
Vium6714g00001 442 MobiDBLite consensus disorder prediction 88 113 - -
Vium6714g00001 442 MobiDBLite consensus disorder prediction 78 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6714g00001 Vium-Chr6714 10649 12947 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vium6714g00001 Myb_DNA-bind_4 8.5e-24 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6714g00001 - - gmx:100816474 646.351