Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6706g00002 ATGGGAAAGTTGAAGTCAAGTGTCATTTCATCAGATTTGGTTCACCGTGGTATTCTACTTTTCCTACTTCTTTTATCACTCTATTCCATTGAACCAGCGTCTTGTGCCTCCAGAGTGAAGTTCCTTCCAGGATTCGAGGGACCCCTTCCTTTTGTTCTTGAAACTGGGTATGTGGGAGTGGGAGTGGGAGTGGGAGAATCAGAGGATGTGCAGACATTTTACTACTTCATTGAGTCAGATAACAACCCCAAGGAAGATCCTCTCCTGCTTTGGCTATCCGGTGGCCCTGGTTGCTCAGGCCTAAGTGCCCTTTTTCTTGAAATAGGTCCACTTGCATTAAAACAGGAGGAGTACAATGGAGGTCCACCCAACTTGATCTTCAGGAATCAATCATGGAACAAGGTTAGTAACATTATATATGTAGACTTGCCTGTTTTCACAGGCTTTACTTATGCCACAACAGAACTTGCTGCTCAAAGTAGAGATACGTTGTTAGCTCGTCAAGCCCATCAATTTCTAAGGAAGTGGTTAATTGATCATCCAAAATTTTTGTCAAACGAAGTTTACATTGCTGGTGATTCATATTCTGGCATTCCCGTTCCAGCAATTGTTCAAGAAATTGCACAAGGTAATGAGAAAGGGTTTCAACCAAGGATAAATCTCCAGGGATACCTTTTGGGGAATCCAATAACAACTAGAAGGGAGCATGACTATGGAATCCCTTTTGCTCATGGAATGGCACTTATTTCTGATGAACTATATGAGTCCCTACAAAAAAATTGTAAAGGAAACTACGTCGATGTGGACTCCGAAAATGTATTATGCTATAAAGATATGGAGTTATTCAATAAGGTATGCATTTTCTCTTTTTTCTATCCTTTTTTTCGTATGAAAGTTTGGTGA 903 0.4064 MGKLKSSVISSDLVHRGILLFLLLLSLYSIEPASCASRVKFLPGFEGPLPFVLETGYVGVGVGVGESEDVQTFYYFIESDNNPKEDPLLLWLSGGPGCSGLSALFLEIGPLALKQEEYNGGPPNLIFRNQSWNKVSNIIYVDLPVFTGFTYATTELAAQSRDTLLARQAHQFLRKWLIDHPKFLSNEVYIAGDSYSGIPVPAIVQEIAQGNEKGFQPRINLQGYLLGNPITTRREHDYGIPFAHGMALISDELYESLQKNCKGNYVDVDSENVLCYKDMELFNKVCIFSFFYPFFRMKVW 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6706g00002 300 Pfam Serine carboxypeptidase 43 284 IPR001563 GO:0004185|GO:0006508
Vium6706g00002 300 Gene3D alpha/beta hydrolase 33 294 IPR029058 -
Vium6706g00002 300 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 37 281 IPR001563 GO:0004185|GO:0006508
Vium6706g00002 300 PRINTS Carboxypeptidase C serine protease (S10) family signature 176 201 IPR001563 GO:0004185|GO:0006508
Vium6706g00002 300 PRINTS Carboxypeptidase C serine protease (S10) family signature 128 140 IPR001563 GO:0004185|GO:0006508
Vium6706g00002 300 PRINTS Carboxypeptidase C serine protease (S10) family signature 141 151 IPR001563 GO:0004185|GO:0006508
Vium6706g00002 300 FunFam Serine carboxypeptidase-like 19 33 290 - -
Vium6706g00002 300 SUPERFAMILY alpha/beta-Hydrolases 39 280 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6706g00002 Vium-Chr6706 4033 6674 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6706g00002 33 71 Calmodulin-binding Proteins AT2G22960 58.974 7.91e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6706g00002 K16296 - gmx:100792006 389.037