Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6704g00001 ATGCTACAGTTACCTCCGAAACGTCGACAAATTATAAGACTGTTGATACAGAGATCGGATATTGTTGCTGCTAAAACTGCAATTGGGGTATTAAGTATTGATGCAACTGAAAGGGAAAGTGAAGAAATAGCTTTGGAAAATTTGGATGAAACTGATGGCAAGCTTTCTTATCAGGAACTTGGAATTGCAAAGCTTTCTGGTTTTCGTGAATGGCTTGCCCTCCATCCAATAGTTGCAGGATCAGAGAATGCTTCAAAAATGATAATTTTTGCTCATCACCACAAAGTTCTTGATGGAGTACAGGAGTTTGTATGTGAGAAAGGTATAAGTTTTGTGCGAATTGATGGAAATACTCTTGCCAGAGATAGGCAATCAGCAGTAGTCTCATTTAGGTCGTCACCAGAGGTTAAAATTGCAATAATAGGTATTCTAGCAGCAGGTTTTGGACTTGATTTCTCAACAGCACAAGATGTGGTGTTCTTGGAGCTACCACAAAGCCCAACTCTAATGCTCCAGGCTGAGGATAGAGCTCATCGTCGAGGACAAACAAATGCGGTTAATGTTTACATATTCTGTGCAAAGGATACCTTGGATGAATCACATTGGAAAAATTTAAACAAAAGTTTGCAACGTGTTTCATGTACAACTGATGGCAAATATGATGCGAAGAAAGAGATAGAGGTTGAAGGTATTTCTTATTTAGGCTCATCTTTTAAAAGAGATAATTGTGAAGAGCAATCCACATGCAAAGATGCAGAAGGGGAAACACAATTGGATTTGCAGCCTTCTGCGGTAAATTCAAATGATTCAGAAGCAAATGAAGATGATAAATCTGGGGAGGGAACTTCTTTTCTTAACAAGTCAATTCAGAGTTTTAATGTTTTGGCTGATGGCGTCTCCTGCCAAGATTTAGGCACAGGTTTAGTTCTGGATGGAAATTGTGATGCTGGTGTTTTTGAAGATGTGGAGAGATATCCTGGAAAGAGTTTAGAAGACGCACATCCATTGCAGGATATAAAAACTGTTTCAACAACAGAAGCAGATGATAACCAGTCTGCTCAGCTGGTTGAAGCCGATAGTCATTGTTCTAATCAAGTTGATTTTCTGCGATTTGAGGTGAGCCCATACACCGGAAGGATCCACTTGTATACTTGCATTTTGGGTACCGATAAACGACCACAACCACTTTATGAAAATTTTCGACCAGAAGAACTTGAGTTGTTGAGTCCTGTTGCTCCTGATCAGAAACAGGTTCATGATGAAAAACAAAAAATAGAGTCTGTTAAGGACAACCCCTTTTATAGGCATGCTCTTCTAGCTTTTGCGGAAGAATGGAAGAACTTAAGGTCAATTGAACGCCGGAAATTAATTGGAAAACCGTTGCAACTCCCTTTGGCTGTTGAATTATGCTATTTGAGTGAAAGCAACGACTACAACAACAATGGATTATTAAATGGTGGAAGTAAAAGGCGCAAGACACCCATAATAGAGGTTAGCTATCCATTACCTCCTGATGCAGTTTGGAAGAAGGTTTCTCTGCGAAGTGGCCTCGGTAAGAGGGAAAGAGAATATACTCAAGGCTGGAGTGTGACAGATGAGCCACTCTGTAAACGTTGTCAAAAGCAGTGCATGGGTAAGAATGCCAAGAGACCTGAATTTCTAGAAGATCTTTTTTGTAACCTTGTCTGCTATGAGGAGTATCGATTGAGAACTAGCAACCGTTTCCTCCGTGAGGAACTTTTCAAAATTGAACATGGTGTGTGCACAAACTGCCAATTAGACTGTCATAAGCTTGTTAAGGATACAAGACCTTTGTCATTGGAAAGGCGACGAGAATTTATACAGAAAATAGCACCAAATATTGCTAAGCGGAAAAACATGTTTGAGAAGCTTGTCAATGAACCAACTGAAGGGAATGCATGGCATGCTGATCACATTGTTCCAGTATATCAAGGAGGAGGTGAATGCAAGCTAGAGAATATGCGTACTCTTTGTGTGGCCTGCCATTCTGATGTGACTGCCGCACAATGTTCTGAACGATCTAAAGCAAGAGCGAATGCGAAGAAAAAACTGAAAGAGTTAATGGGCAGTATCAAAATTGGTATGAAGTGTTCTGCTGTCACTAATATTAAGGTATTGTTTATAGTAATTAGACGATTTTAA 2163 0.3981 MLQLPPKRRQIIRLLIQRSDIVAAKTAIGVLSIDATERESEEIALENLDETDGKLSYQELGIAKLSGFREWLALHPIVAGSENASKMIIFAHHHKVLDGVQEFVCEKGISFVRIDGNTLARDRQSAVVSFRSSPEVKIAIIGILAAGFGLDFSTAQDVVFLELPQSPTLMLQAEDRAHRRGQTNAVNVYIFCAKDTLDESHWKNLNKSLQRVSCTTDGKYDAKKEIEVEGISYLGSSFKRDNCEEQSTCKDAEGETQLDLQPSAVNSNDSEANEDDKSGEGTSFLNKSIQSFNVLADGVSCQDLGTGLVLDGNCDAGVFEDVERYPGKSLEDAHPLQDIKTVSTTEADDNQSAQLVEADSHCSNQVDFLRFEVSPYTGRIHLYTCILGTDKRPQPLYENFRPEELELLSPVAPDQKQVHDEKQKIESVKDNPFYRHALLAFAEEWKNLRSIERRKLIGKPLQLPLAVELCYLSESNDYNNNGLLNGGSKRRKTPIIEVSYPLPPDAVWKKVSLRSGLGKREREYTQGWSVTDEPLCKRCQKQCMGKNAKRPEFLEDLFCNLVCYEEYRLRTSNRFLREELFKIEHGVCTNCQLDCHKLVKDTRPLSLERRREFIQKIAPNIAKRKNMFEKLVNEPTEGNAWHADHIVPVYQGGGECKLENMRTLCVACHSDVTAAQCSERSKARANAKKKLKELMGSIKIGMKCSAVTNIKVLFIVIRRF 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6704g00001 720 CDD HNHc 633 673 IPR003615 -
Vium6704g00001 720 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 73 227 IPR001650 -
Vium6704g00001 720 SMART helicmild6 98 181 IPR001650 -
Vium6704g00001 720 Pfam HNH endonuclease 639 673 IPR002711 GO:0003676|GO:0004519|GO:0008270
Vium6704g00001 720 Pfam Helicase conserved C-terminal domain 80 181 IPR001650 -
Vium6704g00001 720 Gene3D - 564 696 - -
Vium6704g00001 720 Gene3D - 15 275 IPR027417 -
Vium6704g00001 720 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 2 690 - -
Vium6704g00001 720 CDD SF2_C_SNF 63 192 - -
Vium6704g00001 720 MobiDBLite consensus disorder prediction 245 281 - -
Vium6704g00001 720 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 82 244 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6704g00001 Vium-Chr6704 51 16149 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6704g00001 78 234 RAD5 or RAD16-like Gene Family AT1G11100 33.540 2.41e-16 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6704g00001 K25861 - gmx:100788690 1172.15