Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6702g00004 ATGGCTCCTTATTCTACAACAAACAATGGAAGAACATCAAATCAAAGAAAGAGAAAGATTGAGATCAAAGAAGTTGAACAGAAAAACAGACGATGCGTCACCTTTTCAAAACGCAAATTAGGACTTTTTAACAAGCTCACTGAACTTTCTCTTCTATGCAAAGCACAAACTGCTTTGATCATCACCTCTGAAAATGGCAACGTGTATTCCTGTGGTTATCCTAATACCGACGCCGTTCTCTATCGCTATGTCAGCGGAGGGTTTACCGAACTCTGCAAAGTTACACAGGACCAGCAAGAATATAACGAAAAGCAAAGACTTGAATATGAGAATGTGCACAAGAACTTGAAAGAAAAGCACAAGCAATTGGAAGAATTGAAAGAAGCACAAAAGAGTCGTTCTTGTTTTGATTCTTGGTGGAATCTCTCCCATCAAAACATGTCTTTGGAAGATCTTGAAGAGTTCAAGAATTCTTTGGAAACTTTCAAGTTTAATCTCATCACACTGTTGCAAGAGAAAGAAATAAGTCTTCCATTAAGTATGGCATCAAGAAACTCCCAAAGCGTTCTTTAA 573 0.377 MAPYSTTNNGRTSNQRKRKIEIKEVEQKNRRCVTFSKRKLGLFNKLTELSLLCKAQTALIITSENGNVYSCGYPNTDAVLYRYVSGGFTELCKVTQDQQEYNEKQRLEYENVHKNLKEKHKQLEELKEAQKSRSCFDSWWNLSHQNMSLEDLEEFKNSLETFKFNLITLLQEKEISLPLSMASRNSQSVL 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6702g00004 190 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 70 IPR002100 GO:0003677|GO:0046983
Vium6702g00004 190 PANTHER MADS BOX PROTEIN 17 166 - -
Vium6702g00004 190 Gene3D - 27 106 IPR036879 GO:0003677|GO:0046983
Vium6702g00004 190 ProSiteProfiles MADS-box domain profile. 15 75 IPR002100 GO:0003677|GO:0046983
Vium6702g00004 190 Coils Coil 102 133 - -
Vium6702g00004 190 PRINTS MADS domain signature 52 73 IPR002100 GO:0003677|GO:0046983
Vium6702g00004 190 PRINTS MADS domain signature 17 37 IPR002100 GO:0003677|GO:0046983
Vium6702g00004 190 PRINTS MADS domain signature 37 52 IPR002100 GO:0003677|GO:0046983
Vium6702g00004 190 SMART madsneu2 15 74 IPR002100 GO:0003677|GO:0046983
Vium6702g00004 190 SUPERFAMILY SRF-like 17 104 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6702g00004 Vium-Chr6702 15542 16114 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6702g00004 17 168 Type I MADS-box Gene Family AT2G24840 31.210 5.63e-19 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vium6702g00004 SRF-TF 7.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6702g00004 - - gmx:121175156 186.422