Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6702g00001 ATGGAGGGAACTTCATACGCATCTGGGAATGTTTCCTCCACTGCTGAAGATCCTTTTGTTGACGATTTCTACTTTTCAGCACTTCACGATGCTGAAGAAATATTTCCAATTTCGGATGAGAAATATGCCGAAGAGTTACAACTCCAGGAAGCCCTCCATTCCTCCGCAATGTCAAGCGCTAGGGCTGAAAAAGAAGTTGTTATAGTGGACGAAGATGATGACGGCGACCACCATTTGAGAAAGCTCAAGGGGAAACAGAAAGATATCGGTGAATCTTCCCATGGCTACTGTGGTATTTGCATGGATGCGAAATCTGGAGAAGAAATGTTCAAGAACCAAAGCTGTTCTCACCTTTATTGTGTAGATTGCATTGGAGGACATGTTGCTGCAAAGATTCAGGAAAATATATCAATGGTGAAATGCCCTGAGCCAAAATGCAAAGAGGTTATAGAGCCTGAGAACTGTCGTTCGATTATCCCTAAAGAAGTGTTTGATAGATGGGAAAATGCTCTTTGTGAGAATGTAGTGCTTGAATCGCAAAAGTTTTACTGTCCTTTCAAGGATTGTTCAGCTATGATGATATGTGATGAAGGAGAAATAGTAACTATTTCTGAGTGTCCACAATGTAACAGATTGTTTTGTGAACAGTGTAAGGTTTCATGGCATGCAGGAATAGATTGCAGTGAATTCAACGCCTTGGAGCATGATGAGAGAGGGAGGGAAGATCTGCTGGTGCTGGATCTTGCCAAGAACAAAAGCTGGAGAAGATGTCCAAAATGCAGATTCTATGTGGAAAAAAATGAAGGATGTTCTCATATTTCTTGCAG 827 0.4148 MEGTSYASGNVSSTAEDPFVDDFYFSALHDAEEIFPISDEKYAEELQLQEALHSSAMSSARAEKEVVIVDEDDDGDHHLRKLKGKQKDIGESSHGYCGICMDAKSGEEMFKNQSCSHLYCVDCIGGHVAAKIQENISMVKCPEPKCKEVIEPENCRSIIPKEVFDRWENALCENVVLESQKFYCPFKDCSAMMICDEGEIVTISECPQCNRLFCEQCKVSWHAGIDCSEFNALEHDERGREDLLVLDLAKNKSWRRCPKCRFYVEKNEGCSHISC 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6702g00001 275 ProSitePatterns Zinc finger RING-type signature. 115 124 IPR017907 -
Vium6702g00001 275 CDD BRcat_RBR_unk 178 230 - -
Vium6702g00001 275 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 64 275 IPR031127 GO:0004842|GO:0016567
Vium6702g00001 275 ProSiteProfiles TRIAD supradomain profile. 93 275 IPR044066 -
Vium6702g00001 275 SUPERFAMILY RING/U-box 238 275 - -
Vium6702g00001 275 SUPERFAMILY RING/U-box 173 230 - -
Vium6702g00001 275 SUPERFAMILY RING/U-box 92 174 - -
Vium6702g00001 275 Pfam IBR domain, a half RING-finger domain 166 227 IPR002867 GO:0008270
Vium6702g00001 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 177 IPR013083 -
Vium6702g00001 275 SMART ibrneu5 165 227 IPR002867 GO:0008270
Vium6702g00001 275 ProSiteProfiles Zinc finger RING-type profile. 97 145 IPR001841 -
Vium6702g00001 275 Gene3D - 225 275 - -
Vium6702g00001 275 FunFam RBR-type E3 ubiquitin transferase 92 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6702g00001 Vium-Chr6702 218 1044 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6702g00001 90 275 C3H Transcription Factor Family AT2G19610 26.396 1.26e-17 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6702g00001 K11975 - gmx:100816161 400.593