Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium66g00013 ATGCAGCTTGGAGACAACACAGCCATGGAAACCTCCTCTGGTGAGGCTGTGGCGGCGCATGACGGTGGCGAGGTGATTATGATGGATGCAACTTCCGGTGAAGAGAAGGGAAAAGAGGGTGGCTTAGAAGAAGAAGAAGAAGGTGACAAGATCAACAGCTCATGTGCTGGAAACAGATGGCCCCGCCAAGAAACTTTGGCTCTCTTGAAGATAAGGTCGGATATGGATGCTGTATTTCGTGATTCAAGTCTTAAGGGTCCACTTTGGGAAGAAGTTGCAAGGAAACTAGCAGAATTGGGTTACCACCGAAGCGCGAAGAAATGTAAGGAGAAATTCGAGAATGTGTACAAGTACCACAAAAGAACCAAAGAGAGTAGAAGCGGGAAACAGGAGGGGAAAACCTACAAGTTTTTTGATCAATTACAAGCACTCGAGAACCAATTCGTAGTCTCTTACCCGTTAAAACCACAACCCACTTTGACAACAACAAACACGGTTGCATTATTACCTCCGCCAACAAGGCCTAGTGATACAACAACAATCTCTTATGTCACCACCACTGTTCCCTCCATAAACCCTACAGCAATATCTCCCACACCACCTCCACCACTACCACCTACCAATGCCACCACCACAACCACCATCACTTCTCCAACAGTACAAGCCAACCCTAGAAACCCTCCGCAACCCAACAACAATAACCATGACATCCCTTACTCTTTGCCTAACATGAACAACCTCTTCTCCACCACTTCAACCTCTTCTTCCACGGCCTCTGATGAAGACTTGGAAGAGAAATACCGGAAGAAGAGAAAGTGGAAGGACTACTTCAGGAGGCTCACAAGGCAAGTCCTGGCCAAGCAAGAGGAAATGCAAAAGAGGTTCCTGGAAGCCATAGACAAAAGGGAGAGAGAGCACGTGGCACAGCAAGAGGCTTGGAGGATCCTAGAAATGGCAAGGATCAATAGAGAACACGAACTTCTTGTCCAAGAAAGATCAACCGCAGCAGCCAAAAATGCAGCAGTTATTGCTTTTTTGCAACAGTTATCTGGTCAGAACCAGAACCCCTCAACACAAGCCGGTGCCAATTTCCTTCAAACACCGCCTTCACAACCACCACCTCCACCCCAAGTATCACAAGTGAAACCACCACCGCAACCACAGACACCATTGGTGATGTCAAATAATAACAATATTGAAATTCAGAAAATGAATAATGGTCACAGTGCAGTTGCTGCTACTCCTACAACTGCTGCTACTGCTATTTGCGTTGTTTCTACCGCTCCTACTTCGTTGAATTCTTTATCTTCTTCTAGGTGGCCGAAAGCTGAAGTTCATGCCTTGATAAGGCTGAGGACGAGACTTGAAACCAAGTACCAAGAAAATGGACCAAAGGCTCCACTATGGGAGGACATATCAGCAGGAATGTTGAGGCTCGGGTACAACAGGAGTGCGAAGAGATGCAAAGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAAGTGAAGGAAAGCAGCAAGCACAGGCGAGAGAATAGTAAGACATGTCCCTATTTTCAGGAACTGGATGCCATATACAAAGAAAAGAGCAAAAGTCAGAACCCCTTTGGCGTTTCATTCCTGAACATGAAGCCACATGAGATGATGGAGCCCTTGATGGTGCAACCGGAGCAGCAGTGGAGACCTCCCTCGCAATACGAGCAAGGTGGAGTGAAGGAGAACAGTGAAAGTGAATACGAAAGAAAAGAGAGAGAGGAGGAAGAGGAAGACGATGATGAAGAAGTAGAAGAGAACGAGAACGAAGAGGGAGATCTAGAGAGTGTGGAAGACGAAGGAGGGAGCCGTTATGAGATTGCGACAAATAAACTTTCTTCAGTGGACACAGTTGAATGA 1893 0.4649 MQLGDNTAMETSSGEAVAAHDGGEVIMMDATSGEEKGKEGGLEEEEEGDKINSSCAGNRWPRQETLALLKIRSDMDAVFRDSSLKGPLWEEVARKLAELGYHRSAKKCKEKFENVYKYHKRTKESRSGKQEGKTYKFFDQLQALENQFVVSYPLKPQPTLTTTNTVALLPPPTRPSDTTTISYVTTTVPSINPTAISPTPPPPLPPTNATTTTTITSPTVQANPRNPPQPNNNNHDIPYSLPNMNNLFSTTSTSSSTASDEDLEEKYRKKRKWKDYFRRLTRQVLAKQEEMQKRFLEAIDKREREHVAQQEAWRILEMARINREHELLVQERSTAAAKNAAVIAFLQQLSGQNQNPSTQAGANFLQTPPSQPPPPPQVSQVKPPPQPQTPLVMSNNNNIEIQKMNNGHSAVAATPTTAATAICVVSTAPTSLNSLSSSRWPKAEVHALIRLRTRLETKYQENGPKAPLWEDISAGMLRLGYNRSAKRCKEKWENINKYFKKVKESSKHRRENSKTCPYFQELDAIYKEKSKSQNPFGVSFLNMKPHEMMEPLMVQPEQQWRPPSQYEQGGVKENSESEYERKEREEEEEDDDEEVEENENEEGDLESVEDEGGSRYEIATNKLSSVDTVE 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium66g00013 630 FunFam Trihelix transcription factor GT-2 60 121 - -
Vium66g00013 630 FunFam Trihelix transcription factor GT-2 440 501 - -
Vium66g00013 630 SMART sant 436 498 IPR001005 -
Vium66g00013 630 SMART sant 56 118 IPR001005 -
Vium66g00013 630 MobiDBLite consensus disorder prediction 194 208 - -
Vium66g00013 630 MobiDBLite consensus disorder prediction 353 390 - -
Vium66g00013 630 CDD GT1 438 503 - -
Vium66g00013 630 PANTHER FI21293P1 32 585 - -
Vium66g00013 630 ProSiteProfiles Myb-like domain profile. 432 496 IPR001005 -
Vium66g00013 630 Gene3D - 60 121 - -
Vium66g00013 630 Gene3D - 440 501 - -
Vium66g00013 630 MobiDBLite consensus disorder prediction 192 267 - -
Vium66g00013 630 Coils Coil 572 611 - -
Vium66g00013 630 MobiDBLite consensus disorder prediction 367 390 - -
Vium66g00013 630 Pfam Myb/SANT-like DNA-binding domain 58 144 IPR044822 -
Vium66g00013 630 Pfam Myb/SANT-like DNA-binding domain 438 525 IPR044822 -
Vium66g00013 630 MobiDBLite consensus disorder prediction 582 608 - -
Vium66g00013 630 CDD GT1 58 123 - -
Vium66g00013 630 MobiDBLite consensus disorder prediction 558 572 - -
Vium66g00013 630 MobiDBLite consensus disorder prediction 31 52 - -
Vium66g00013 630 ProSiteProfiles Myb-like domain profile. 52 116 IPR001005 -
Vium66g00013 630 MobiDBLite consensus disorder prediction 209 258 - -
Vium66g00013 630 MobiDBLite consensus disorder prediction 557 630 - -
Vium66g00013 630 MobiDBLite consensus disorder prediction 1 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium66g00013 Vium-Chr66 102364 105849 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium66g00013 53 559 Trihelix Transcription Factor Family AT1G76890 46.255 3.70e-132 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vium66g00013 Myb_DNA-bind_4 1.8e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium66g00013 - - gsj:114370603 855.514