Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium669g00003 ATGACTGGTTCAGGATCTCCTTGTGGAGCCTGCAAATTCTTGAGAAGAAAATGCGTGAGAGGTTGTGTTTTTGCACCTTACTTTTGCCATGAACAAGGTGCTACTCATTTTGCAGCCATTCATAAGGTCTTTGGTGCAAGCAATGTTTCAAAGCTCCTTGCTCACCTCCCTGTGACTGATCGTTGTGAAGCTGCAGTCACAATCTCATATGAAGCTCAAGCCAGACTTCAGGATCCTATTTATGGCTGTGTCTCCCATATTTTTGCACTCCAACAACAGGTGGTCAATTTACAAGCACAACTGGCGTATCTCAAGGAACAAGCTGCCCAGAGTTGTCTCAACGCCTCTGTCAGTGAAAACCCTAGTGAAAAATTATTTGAAAAATCTTCAGGTGCTTTACCGCAAGATCTTCAAAGTTGGTTTCAGGTGGAAAATTCCAACCTGGGGCCAGAGTTTCTTCCTAACATGTGTACTAATTTTTCAACACAAAAACATTATGGGAATAATGCTCTCATTGAAGATCTAAACCCTACCGGGATCAATTATGAAAATTCAGGTGCCATGGAAGAAAACAGCTCCTTTTCTAGCTTTGACGAGAGTTCCAATAGCTATTCCATGTCCTATGACATGCACACAAACAGGAGGACGTGGGGTTTTCATGAAGTGGAGGACCTACATTCAGTGGCTTTTGGGTACAGTACTCGAACACATTCATGA 717 0.4282 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVTDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLAYLKEQAAQSCLNASVSENPSEKLFEKSSGALPQDLQSWFQVENSNLGPEFLPNMCTNFSTQKHYGNNALIEDLNPTGINYENSGAMEENSSFSSFDESSNSYSMSYDMHTNRRTWGFHEVEDLHSVAFGYSTRTHS 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium669g00003 238 Coils Coil 87 107 - -
Vium669g00003 238 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Vium669g00003 238 Pfam Lateral organ boundaries (LOB) domain 7 105 IPR004883 -
Vium669g00003 238 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium669g00003 Vium-Chr669 43450 44892 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium669g00003 7 232 AS2 family AT3G58190 50.435 2.63e-71 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium669g00003 LOB 6.5e-36 No_clan